Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j24
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    33   0.17 
08_01_0403 + 3584816-3584941,3585801-3585935,3586020-3586067,358...    31   0.91 

>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 129 LLKIENIFNRIAYCIHKKEKVEVMPFNLRNSDKPNKRNI 245
           LL+ +NI N+     H   +VE +P    ++D  NKRN+
Sbjct: 300 LLEAQNIINQADSIEHSSNRVESLPLETTSTDNSNKRNL 338


>08_01_0403 +
           3584816-3584941,3585801-3585935,3586020-3586067,
           3587042-3587166,3587248-3587347
          Length = 177

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 380 ITIERLK-SPDNSRIMYKPIDFTSNGKFFYI 291
           I  +RLK S D   + Y P+DF S+  FFY+
Sbjct: 141 ICAQRLKGSEDGFTLCYSPLDFVSSAGFFYV 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,462,436
Number of Sequences: 37544
Number of extensions: 219873
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)