Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j24
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    33   0.20 
AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine r...    29   3.3  

>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/54 (35%), Positives = 32/54 (59%)
 Frame = +3

Query: 249 MILTNLI*YFLSYLYIKKLTVAREIYWLIHYSGIIWTL*AFYCNKYYIILYFVV 410
           +++TNL+   L YL +  LT  +EI+  IHYS ++ T       K ++IL+F +
Sbjct: 123 VLVTNLLVGVLFYLLLVVLTQLKEIFSPIHYS-LMSTTKTTNAQKIFLILFFAL 175


>AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 61 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 297 KKLTVAREIYWLIHYSGII-WTL*AFYCNKYYIILYFVVEINNSYVM 434
           KKLT     Y  + Y+GI+ WT+     N+Y  +  FV++IN ++++
Sbjct: 223 KKLTKIALTYCFL-YAGILCWTVITALHNQYNFLPSFVIKINQTFLV 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,961,547
Number of Sequences: 27780
Number of extensions: 274571
Number of successful extensions: 541
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)