Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1j22
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 295 4e-81
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 142 5e-35
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 127 1e-30
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 120 2e-28
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 107 2e-24
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 93 5e-20
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 88 1e-18
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 79 5e-16
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 76 5e-15
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 75 1e-14
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 73 6e-14
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 68 1e-12
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 68 2e-12
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 64 2e-11
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 60 2e-10
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 60 3e-10
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 57 2e-09
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 56 5e-09
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 53 4e-08
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 48 1e-06
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 39 8e-04
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 31 0.13
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.13
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 31 0.17
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 31 0.23
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 30 0.30
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 29 0.52
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 29 0.52
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.69
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.2
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 1.2
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 28 1.6
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 1.6
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 27 2.8
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.7
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.8
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 4.8
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 6.4
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 26 6.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 8.5
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 8.5
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 25 8.5
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 295 bits (724), Expect = 4e-81
Identities = 138/192 (71%), Positives = 161/192 (83%)
Frame = +3
Query: 156 EGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVV 335
E YY KI++ +L + +K+QNLRRL+AQRN LNA+VR+LR GSYVGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 336 KPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSL 515
K M K KVLVKVHPEGK+VVD+ ++DI ++ N RVALRN+SY L KILPNKVDPLVSL
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 516 MMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKT 695
MMVEK+PDSTYEMVGGL+KQIKEIKEVIELPVKHPELF++LGI QPKG+LLYGPPGTGKT
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKT 193
Query: 696 LLARAVAHHTEC 731
LLARAVAHHT+C
Sbjct: 194 LLARAVAHHTDC 205
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 142 bits (344), Expect = 5e-35
Identities = 70/135 (51%), Positives = 96/135 (71%)
Frame = +3
Query: 312 GSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPN 491
G +GEV+K +D ++ +VK ++VV NVD + + RV+L + T+ +ILP
Sbjct: 53 GQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPR 112
Query: 492 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 671
+VDPLV M +E D ++ VGGL++QI+E++EVIELP+K+PELF +GI PKGVLLY
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLY 172
Query: 672 GPPGTGKTLLARAVA 716
GPPGTGKTLLARAVA
Sbjct: 173 GPPGTGKTLLARAVA 187
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 127 bits (307), Expect = 1e-30
Identities = 61/130 (46%), Positives = 82/130 (63%)
Frame = +3
Query: 345 DKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMV 524
+K ++ + KFVV L + V D+ RV Y + LP K+DP V++M V
Sbjct: 111 EKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQV 170
Query: 525 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 704
E+ PD TY VGG +QI+ ++EV+ELP+ PE F LGI PKG++LYGPPGTGKTL A
Sbjct: 171 EEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCA 230
Query: 705 RAVAHHTECT 734
RAVA+ T+ T
Sbjct: 231 RAVANRTDAT 240
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 120 bits (289), Expect = 2e-28
Identities = 65/184 (35%), Positives = 106/184 (57%)
Frame = +3
Query: 183 KIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLRXXXXXXXXXGSYVGEVVKPMDKKKVL 362
+I + L+ E QN RL+ Q + + G+ + E++ D ++
Sbjct: 74 RIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGT-LEEIID--DDHAIV 130
Query: 363 VKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDS 542
PE + V + VD + + C V L +++ ++ +L + DP++++M ++K P
Sbjct: 131 STAGPE--YYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 543 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHH 722
+Y +GGL+ QI+EIKE +ELP+ HPEL++ +GI PKGV+LYG PGTGKTLLA+AVA+
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 248
Query: 723 TECT 734
T T
Sbjct: 249 TSAT 252
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 107 bits (256), Expect = 2e-24
Identities = 52/135 (38%), Positives = 84/135 (62%)
Frame = +3
Query: 321 VGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVD 500
+G+ ++ +D+ +V +VV + +D + + VAL+ S L ILP + D
Sbjct: 58 IGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEAD 117
Query: 501 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP 680
+S++ ++ PD +Y VGGLD Q +E++E +ELP+ +L+ +GI P+GVLLYGPP
Sbjct: 118 SSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPP 177
Query: 681 GTGKTLLARAVAHHT 725
GTGKT+L +AVA+ T
Sbjct: 178 GTGKTMLVKAVANST 192
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 92.7 bits (220), Expect = 5e-20
Identities = 47/128 (36%), Positives = 71/128 (55%)
Frame = +3
Query: 351 KKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEK 530
K ++K + L V+ ++ + + +SY + LP++ D V M V++
Sbjct: 119 KSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDE 178
Query: 531 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 710
P Y +GGL KQI+E+ E I LP++ + F LG+ PKG L++GPPGTGKTLLARA
Sbjct: 179 KPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARA 238
Query: 711 VAHHTECT 734
A + T
Sbjct: 239 CAAQSNAT 246
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 88.2 bits (209), Expect = 1e-18
Identities = 34/60 (56%), Positives = 52/60 (86%)
Frame = +3
Query: 546 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 725
Y+ +GG +Q+ +I+E++ELP++HP+LF ++GI P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282
Score = 78.2 bits (184), Expect = 1e-15
Identities = 47/139 (33%), Positives = 81/139 (58%)
Frame = +3
Query: 318 YVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKV 497
YVG + + + + ++ E ++DLD++ +V + V + N + L P+ +
Sbjct: 426 YVGSDLASLCSEAAMQQIR-EKMDMIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSAL 484
Query: 498 DPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGP 677
V VE VP+ +E +GGL++ +E++E +++PV + E F G+ KGVL +GP
Sbjct: 485 RETV----VE-VPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGP 539
Query: 678 PGTGKTLLARAVAHHTECT 734
PGTGKTLLA+A+A+ EC+
Sbjct: 540 PGTGKTLLAKAIAN--ECS 556
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 79.4 bits (187), Expect = 5e-16
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = +3
Query: 543 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 716
T+ +GGL QI +I++++ELP ++PELF I P+GVLLYGPPGTGKT++ RAVA
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVA 334
Score = 67.7 bits (158), Expect = 2e-12
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +3
Query: 534 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 713
P+ + +GG ++ +++KE +E P+ H E F LG+ PKGVLLYGPPG KT+ A+A+
Sbjct: 543 PNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAKAI 602
Query: 714 AHHT 725
A T
Sbjct: 603 ATET 606
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 76.2 bits (179), Expect = 5e-15
Identities = 31/58 (53%), Positives = 45/58 (77%)
Frame = +3
Query: 543 TYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 716
++E VGGLD I ++KE++ LP+ +PE+F + P+GVL +GPPGTGKTL+ARA+A
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 237 DDEDFEIFRRQ*AVTLQSWLCSTGENPRP 151
D ED EIF Q +++ S L E+P+P
Sbjct: 1007 DIEDNEIFTNQSTMSVPSMLVENEESPKP 1035
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 74.5 bits (175), Expect = 1e-14
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = +3
Query: 525 EKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLA 704
E D + +GGLD I E+ E++ +P+KHPE++ GI P+GVLL+GPPG GKT+LA
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLA 225
Query: 705 RAVAH 719
A+A+
Sbjct: 226 NALAN 230
Score = 69.7 bits (163), Expect = 4e-13
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = +3
Query: 492 KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLY 671
KV P VP ++ +G L E++ I P+K PEL+ ++GI+ P GVLL+
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLW 532
Query: 672 GPPGTGKTLLARAVAHHTE 728
GPPG GKTLLA+AVA+ ++
Sbjct: 533 GPPGCGKTLLAKAVANESK 551
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 72.5 bits (170), Expect = 6e-14
Identities = 32/85 (37%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Frame = +3
Query: 489 NKVDPLV-SLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--IAQPKG 659
N+ + +V S +++ D +++ +GG+D+ + ++ + + P+K+PE+FD G ++ PKG
Sbjct: 68 NEYEQIVASQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKG 127
Query: 660 VLLYGPPGTGKTLLARAVAHHTECT 734
+LLYGPPG GKT+LA+A+A ++ T
Sbjct: 128 LLLYGPPGCGKTMLAKALAKQSQAT 152
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 68.1 bits (159), Expect = 1e-12
Identities = 29/57 (50%), Positives = 43/57 (75%)
Frame = +3
Query: 546 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 716
+ +GGL+ I ++KE++ LP+ +PE+F L I P+GVL +GPPGTGKTL+AR +A
Sbjct: 371 FNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARVLA 427
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 67.7 bits (158), Expect = 2e-12
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +3
Query: 531 VPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 710
VP ++ +GGL++ +++ ++LP++ PELF G+ GVLLYGPPGTGKTLLA+A
Sbjct: 649 VPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKA 707
Query: 711 VA 716
VA
Sbjct: 708 VA 709
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 64.1 bits (149), Expect = 2e-11
Identities = 33/71 (46%), Positives = 48/71 (67%)
Frame = +3
Query: 504 LVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPG 683
L S ++VEK P+ ++ + GL+ + +KE + LP+K P+LF G G+LLYGPPG
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLFSH-GRKPWSGILLYGPPG 172
Query: 684 TGKTLLARAVA 716
TGK+ LA+AVA
Sbjct: 173 TGKSYLAKAVA 183
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 60.5 bits (140), Expect = 2e-10
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 555 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTEC 731
+ GLD +KE + P PELF G+ +P +G+LL+GPPGTGKT+LARAVA +
Sbjct: 381 IAGLDDAKNSLKEAVIYPFLRPELFQ--GLREPVQGMLLFGPPGTGKTMLARAVATEAKA 438
Query: 732 T 734
T
Sbjct: 439 T 439
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 60.1 bits (139), Expect = 3e-10
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = +3
Query: 519 MVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTL 698
M E+ + + V G+D+ +E++E+++ ++ P F LG P+GVLL GPPGTGKT+
Sbjct: 257 MEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 699 LARAVA 716
LARAVA
Sbjct: 316 LARAVA 321
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/54 (48%), Positives = 39/54 (72%)
Frame = +3
Query: 555 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 716
V G+D+ +EI E ++ +K+P+ ++ LG P+G +L GPPGTGKTLLA+A A
Sbjct: 298 VAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGKTLLAKATA 350
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 56.0 bits (129), Expect = 5e-09
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +3
Query: 546 YEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQP-KGVLLYGPPGTGKTLLARAVA 716
++ + GL+ +KE + P P+LF G+ +P +G+LL+GPPGTGKT+LARAVA
Sbjct: 458 WDDISGLEFAKHSLKEAVVYPFLRPDLFQ--GLREPARGMLLFGPPGTGKTMLARAVA 513
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 53.2 bits (122), Expect = 4e-08
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +3
Query: 555 VGGLDKQIKEI-KEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAV 713
+GGLD + I + + P + + LGI KG+LLYGPPGTGKTL+AR +
Sbjct: 271 IGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTGKTLIARQI 324
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 48.0 bits (109), Expect = 1e-06
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +3
Query: 555 VGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 716
+ G+ + + ++++IE PVK+ ++ + P G+LL+G PG GKT LA A++
Sbjct: 608 IAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASAIS 661
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 564 LDKQIKE-IKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 716
L+ +K+ I + + +++ + +D GI +G LLYGPPG+GKT A+A
Sbjct: 212 LESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALA 263
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 31.5 bits (68), Expect = 0.13
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 537 DSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI-AQPKGVLLYGPPGTGKTLLARAV 713
DS G + I +K++ K P L +L + PKG+ LYG G GKT L
Sbjct: 80 DSMPAEKGSILSWISPLKKMFSRK-KSPTLTSSLPVPGMPKGIYLYGDVGCGKTALMDLF 138
Query: 714 AHH 722
H+
Sbjct: 139 YHN 141
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 639 GIAQPKGVLLYGPPGTGKTLLARAVA 716
G+ K VLL GPPG GKT A VA
Sbjct: 405 GLGLYKAVLLSGPPGIGKTTAAHLVA 430
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 663 LLYGPPGTGKTLLARAVAHH 722
L+ GPPGTGKT+ + +V +H
Sbjct: 411 LIQGPPGTGKTVTSASVVYH 430
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 660 VLLYGPPGTGKTLLARAVAHHTE 728
+++ G PGTGKT LA VA TE
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTE 33
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 564 LDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVA 716
LD+ +K+V + ++ + G Q K + L GPPG GKT + +++A
Sbjct: 542 LDRDHYGLKDVKDRVLELVAVGKLRGTMQGKIMCLVGPPGVGKTSVGKSIA 592
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +3
Query: 654 KGVLLYGPPGTGKTLLARAVA 716
KGVL G GTGKT LA A+A
Sbjct: 65 KGVLFAGGAGTGKTALALAIA 85
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 29.5 bits (63), Expect = 0.52
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 558 GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPP-GTGKTLLARAVAHHTE 728
G L QI+E+ I P+K + DA + YG P G L V +HTE
Sbjct: 266 GSLRTQIEELAASINFPLKKLYVIDASRRSTHSNAFFYGLPWNKGIVLFDTLVKNHTE 323
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.69
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +3
Query: 501 PLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPK----GVLL 668
P+ L EK E V L KQ+ E + L A G++ P L
Sbjct: 563 PVTRLKTTEKERLLNMEKV--LSKQVIGQNEAVTAVANAIRLSRA-GLSDPNQPIASFLF 619
Query: 669 YGPPGTGKTLLARAVA 716
GP GTGKTLL +A+A
Sbjct: 620 CGPSGTGKTLLTKALA 635
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 654 KGVLLYGPPGTGKTLLARAVAHHT 725
K +LL G PG GKT L A+A T
Sbjct: 1560 KPILLEGSPGVGKTSLITALARET 1583
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 660 VLLYGPPGTGKTLLARAVA 716
+L YGPPGTGKT A A
Sbjct: 59 MLFYGPPGTGKTSTILACA 77
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 660 VLLYGPPGTGKTLLARAVAHHTE 728
++L+G GTGKT LAR +A T+
Sbjct: 123 MILWGSAGTGKTTLARLIAVTTK 145
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 654 KGVLLYGPPGTGKTLLARAVA 716
+ +L+ GPP TGKT +A +A
Sbjct: 66 RAILMAGPPSTGKTAIAMGMA 86
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 511 DTRGSTLLGSILCNV*LSLRRATRQFAVTSLISTFLSKSTT 389
DTR + S +CN+ L +F T+ I T +S +T
Sbjct: 439 DTRVKSTATSAICNLVLKFSPLREKFLTTNFIDTLISNIST 479
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 534 PDSTYEMVGGLDKQIKEIKEV 596
P +YE++ GLDKQ + K+V
Sbjct: 18 PKESYELLHGLDKQYQSTKDV 38
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 427 TSLISTFLSKSTTNLPSG*TFTRTFFLSIGLTT 329
TS+IS+ S S T++PS + +FF + G T+
Sbjct: 822 TSIISSIASSSYTSIPSISSIASSFFDASGFTS 854
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 4.8
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +3
Query: 405 KNVDINDVTANCRVA---LRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQ 575
+++D+ + N R L N + +L + K L L + +++ D+ +
Sbjct: 1202 ESIDLQEYAPNIRFTAQKLFNATTSLREFAALK--SLRHLPLSQRILDANVTRLPSNFTD 1259
Query: 576 IKEIKEVIELPVKHPELFDALGIAQPKG-VLLYGPPGTGKT 695
K+ K + V P+ + + G L+ GPPGTGKT
Sbjct: 1260 DKKQKIMKSYGVNEPQAYAIYASSVNDGFTLIQGPPGTGKT 1300
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +3
Query: 663 LLYGPPGTGKT 695
L++GPPGTGKT
Sbjct: 229 LIHGPPGTGKT 239
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 189 EELQLIVAEKSQNLRRLQAQ 248
EEL+LI K ++ RRLQAQ
Sbjct: 275 EELELIAERKRESGRRLQAQ 294
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 479 NTTQQSRSSCVAHDGRESAGLYLRNGRWSRQTNQGD 586
N+T + SS A+ +S+G ++ NG+ + + G+
Sbjct: 233 NSTSKVMSSASANKPSKSSGFHINNGKSKEEKSHGE 268
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 651 PKGVLLYGPPGTGKTLLARAV 713
P V + GPPGTGK+ L +++
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSL 94
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 654 KGVLLYGPPGTGK-TLLARAVAHH 722
K V+++GP G GK TLL R + H
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDH 42
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 29 NWRCFVLHF*ELKSNIQYLKFM*ESVTQYDSHD*NGSGHGE 151
+W F F EL+ NI+Y E ++D HD G E
Sbjct: 333 SWSAFAPDFQELEENIEYE----EPEDEFDIHDETGKSEEE 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,552
Number of Sequences: 5004
Number of extensions: 56517
Number of successful extensions: 244
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -