Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j22
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.2  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   6.9  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 512  AHDGRESAGLYLRNGRWSRQTNQG 583
            AH    S  +  +NGR+SR  +QG
Sbjct: 1771 AHSRSGSQSMPRQNGRYSRVPSQG 1794


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 555 VGGLDKQIKEIKEVIELPVKHPELFD 632
           VGG    I +I  +I+LP   P + D
Sbjct: 10  VGGFCHSIIQIPVIIQLPFCGPNVID 35


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 717 ERQHELIMSFQCPEAH 670
           ER H     F+CPE H
Sbjct: 1   ERTHTGEKPFECPECH 16


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 346 IKRRSS*KFILKVNSSSI*TRTLILMMSRRIVVSLFATKAIRYTKYY 486
           I+RRS      K+  SSI   T   + + ++ V + A   I +T YY
Sbjct: 231 IRRRSKKSEDDKIRRSSIGFLTRAKIRTLKMTVIIIAVFFICWTPYY 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,818
Number of Sequences: 438
Number of extensions: 3927
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)