Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j21
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   2.8  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   3.7  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   4.9  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   6.4  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    26   6.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.5  

>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 191 YLLNSPKPHNLNEV-ITVNIYILNSNHV 271
           Y+++S +PHNLN + I  NI++ +   +
Sbjct: 106 YVIDSHRPHNLNNIYIENNIFVFDDGDI 133


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 423 SWSAKISPQRDDSYEKHQQFHAH 355
           +W A+I    DDSY++ +Q HA+
Sbjct: 670 TWVAEIGGYLDDSYDELEQHHAN 692


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 135 VEWIKRPCFLIPYIFWCLFRKISSSFILXHQYKKILFXTI 16
           V  +KR  F IP++  C+F  I SS    + Y   LF TI
Sbjct: 482 VSVVKRVAFNIPFLLICIFFYIQSSPPFYYGY--ALFPTI 519


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 501 VYLHLVLHLHISDILFVVVYPS*KL*---SWSAKISPQRDDSYEKHQQFHAHSDIVYRVR 331
           V LH VL  H+  +  V + PS +        AKI     +S E  Q  H HS++V +V 
Sbjct: 608 VCLH-VLRGHVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVT 666

Query: 330 KNLNL 316
            N N+
Sbjct: 667 FNQNI 671


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 498 KLRNLALRNESNLQCLFGDE 557
           K +NL+LR+E    C+F DE
Sbjct: 141 KFKNLSLRDEMVSDCVFADE 160


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 261  RTTSY*QEITVAVNMDKSRGLNFFELCRLCLNEHGTVDVFHTNHLAEEIFLLTTI 425
            R   Y +E  + VN    R L+  EL    +NE G    + TNH+ E +  L T+
Sbjct: 1792 RVLMYEEEQKLPVNEQSERFLSG-ELVTRIINEFGRSLYYGTNHIYESMPKLLTL 1845


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 91   KNIRNQKTRP--FD--PFHLLNTALYIYRKQINGVFVL 192
            KNI  + TR   FD    H  NTALYIY + ++ +  L
Sbjct: 1013 KNIEEEMTRESYFDLQAGHTRNTALYIYGRTMDNLHYL 1050


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +1

Query: 91   KNIRNQKTRP--FD--PFHLLNTALYIYRKQINGVFVL 192
            KNI  + TR   FD    H  NTALYIY + ++ +  L
Sbjct: 1013 KNIEEEMTRESYFDLQAGHTRNTALYIYGRTMDNLHYL 1050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,460
Number of Sequences: 5004
Number of extensions: 50112
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)