Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j21
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538...    29   2.9  
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961...    29   3.9  

>06_03_1313 -
           29252335-29252446,29253430-29253671,29253770-29253848,
           29254991-29255130,29255262-29255571,29255810-29255952,
           29256106-29256306,29256453-29256581,29256921-29257199,
           29258036-29259720,29261255-29261764,29261901-29262108,
           29264347-29264458,29264594-29264763
          Length = 1439

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 468 KCVDVIQDANKLRNLALRNESNL-QCLFGDESRDEITDELNQIKSHIVNN 614
           +C   +Q  N L +L +   + L QC  G +  +++ D+ NQ+ S +V++
Sbjct: 427 QCSLKLQQQNSLHHLVMSRGNVLTQCHLGSDHAEKLLDKRNQLHSELVSS 476


>09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,
            9614416-9614501,9615519-9615678,9616122-9617438,
            9619463-9620428,9621452-9621766
          Length = 1199

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 477  DVIQDANKLRNLALRNESNLQCLFG--DESRDEITDELNQIK 596
            D+I +  +LR LA  N  + Q + G  D SRD +T+E N IK
Sbjct: 1137 DLIAETARLRGLA-NNAIDKQYVEGKCDTSRDHLTEECNDIK 1177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,296
Number of Sequences: 37544
Number of extensions: 255089
Number of successful extensions: 549
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)