Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1j21
(739 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK125925-1|BAC86346.1| 623|Homo sapiens protein ( Homo sapiens ... 32 2.5
AK056756-1|BAB71273.1| 376|Homo sapiens protein ( Homo sapiens ... 32 2.5
AC022404-1|AAG17473.1| 95|Homo sapiens unknown protein. 31 3.3
BC013357-1|AAH13357.1| 624|Homo sapiens ring finger protein 12 ... 30 10.0
AL513007-2|CAI41712.1| 624|Homo sapiens ring finger protein 12 ... 30 10.0
AK001334-1|BAA91632.1| 624|Homo sapiens protein ( Homo sapiens ... 30 10.0
AJ271670-1|CAC14228.1| 624|Homo sapiens RING zinc finger LIM do... 30 10.0
AF155109-1|AAD42875.1| 483|Homo sapiens putative ring zinc fing... 30 10.0
>AK125925-1|BAC86346.1| 623|Homo sapiens protein ( Homo sapiens
cDNA FLJ43937 fis, clone TESTI4013924. ).
Length = 623
Score = 31.9 bits (69), Expect = 2.5
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 498 KLRNLALRNESNLQCLFGD-ESRDEITDELNQIKSHIV 608
+LRNL ES LQCLF E ++++ DE+++ K ++
Sbjct: 537 QLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLL 574
>AK056756-1|BAB71273.1| 376|Homo sapiens protein ( Homo sapiens
cDNA FLJ32194 fis, clone PLACE6002419, weakly similar to
TRICHOHYALIN. ).
Length = 376
Score = 31.9 bits (69), Expect = 2.5
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 498 KLRNLALRNESNLQCLFGD-ESRDEITDELNQIKSHIV 608
+LRNL ES LQCLF E ++++ DE+++ K ++
Sbjct: 183 QLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLL 220
>AC022404-1|AAG17473.1| 95|Homo sapiens unknown protein.
Length = 95
Score = 31.5 bits (68), Expect = 3.3
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 498 KLRNLALRNESNLQCLFGD-ESRDEITDELNQIK 596
+LRNL ES LQCLF E ++++ DE+++ K
Sbjct: 61 QLRNLTENKESELQCLFQQIERQEQLLDEIHREK 94
>BC013357-1|AAH13357.1| 624|Homo sapiens ring finger protein 12
protein.
Length = 624
Score = 29.9 bits (64), Expect = 10.0
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 VNMDKSRGLNFFELCRL-CLNEHGTVDVFHTNHLAEEIFLLTTITISTMDKLPQKVCQKC 473
V D+S L F L + LNE D E+I L + D L K C C
Sbjct: 518 VTFDESGSLPFLSLAQFFLLNEDD--DDQPRGLTKEQIDNLAMRSFGENDAL--KTCSVC 573
Query: 474 VDVIQDANKLRNLALRNESNLQCL 545
+ + NKLR L +E ++ C+
Sbjct: 574 ITEYTEGNKLRKLPCSHEYHVHCI 597
>AL513007-2|CAI41712.1| 624|Homo sapiens ring finger protein 12
protein.
Length = 624
Score = 29.9 bits (64), Expect = 10.0
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 VNMDKSRGLNFFELCRL-CLNEHGTVDVFHTNHLAEEIFLLTTITISTMDKLPQKVCQKC 473
V D+S L F L + LNE D E+I L + D L K C C
Sbjct: 518 VTFDESGSLPFLSLAQFFLLNEDD--DDQPRGLTKEQIDNLAMRSFGENDAL--KTCSVC 573
Query: 474 VDVIQDANKLRNLALRNESNLQCL 545
+ + NKLR L +E ++ C+
Sbjct: 574 ITEYTEGNKLRKLPCSHEYHVHCI 597
>AK001334-1|BAA91632.1| 624|Homo sapiens protein ( Homo sapiens
cDNA FLJ10472 fis, clone NT2RP2000054. ).
Length = 624
Score = 29.9 bits (64), Expect = 10.0
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 VNMDKSRGLNFFELCRL-CLNEHGTVDVFHTNHLAEEIFLLTTITISTMDKLPQKVCQKC 473
V D+S L F L + LNE D E+I L + D L K C C
Sbjct: 518 VTFDESGSLPFLSLAQFFLLNEDD--DDQPRGLTKEQIDNLAMRSFGENDAL--KTCSVC 573
Query: 474 VDVIQDANKLRNLALRNESNLQCL 545
+ + NKLR L +E ++ C+
Sbjct: 574 ITEYTEGNKLRKLPCSHEYHVHCI 597
>AJ271670-1|CAC14228.1| 624|Homo sapiens RING zinc finger LIM
domain binding protein protein.
Length = 624
Score = 29.9 bits (64), Expect = 10.0
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 VNMDKSRGLNFFELCRL-CLNEHGTVDVFHTNHLAEEIFLLTTITISTMDKLPQKVCQKC 473
V D+S L F L + LNE D E+I L + D L K C C
Sbjct: 518 VTFDESGSLPFLSLAQFFLLNEDD--DDQPRGLTKEQIDNLAMRSFGENDAL--KTCSVC 573
Query: 474 VDVIQDANKLRNLALRNESNLQCL 545
+ + NKLR L +E ++ C+
Sbjct: 574 ITEYTEGNKLRKLPCSHEYHVHCI 597
>AF155109-1|AAD42875.1| 483|Homo sapiens putative ring zinc finger
protein NY-REN-43 antigen protein.
Length = 483
Score = 29.9 bits (64), Expect = 10.0
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 297 VNMDKSRGLNFFELCRL-CLNEHGTVDVFHTNHLAEEIFLLTTITISTMDKLPQKVCQKC 473
V D+S L F L + LNE D E+I L + D L K C C
Sbjct: 377 VTFDESGSLPFLSLAQFFLLNEDD--DDQPRGLTKEQIDNLAMRSFGENDAL--KTCSVC 432
Query: 474 VDVIQDANKLRNLALRNESNLQCL 545
+ + NKLR L +E ++ C+
Sbjct: 433 ITEYTEGNKLRKLPCSHEYHVHCI 456
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,292,584
Number of Sequences: 237096
Number of extensions: 1488512
Number of successful extensions: 2636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2636
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8791154398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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