Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j21
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical pr...    34   0.12 
U97000-6|AAC47992.2|  134|Caenorhabditis elegans Hypothetical pr...    32   0.49 
AC024805-8|AAK39337.2|  169|Caenorhabditis elegans Hypothetical ...    28   7.9  

>U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical
           protein C31H2.1b protein.
          Length = 639

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +3

Query: 483 IQDANKLRNLALRNESNLQCLFGDESRDEITDELNQIK 596
           I  A K+RNL     + LQ  F DE RDE+T    QIK
Sbjct: 406 IATAVKIRNLQSATIAKLQAQFEDELRDEVTSRPRQIK 443


>U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical
           protein C31H2.1a protein.
          Length = 696

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +3

Query: 483 IQDANKLRNLALRNESNLQCLFGDESRDEITDELNQIK 596
           I  A K+RNL     + LQ  F DE RDE+T    QIK
Sbjct: 463 IATAVKIRNLQSATIAKLQAQFEDELRDEVTSRPRQIK 500


>U97000-6|AAC47992.2|  134|Caenorhabditis elegans Hypothetical
           protein F21F8.2 protein.
          Length = 134

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +2

Query: 158 STGNKSTEFLYYLLNSPKPHNLNEVITVNIYILNSNHVILTGN 286
           +T + +T+  Y   NS KP NLN VI  NIY++  N+ ++  N
Sbjct: 43  ATYDNTTKSYYVSCNSEKP-NLNIVIGNNIYVVEPNNYVIDIN 84


>AC024805-8|AAK39337.2|  169|Caenorhabditis elegans Hypothetical
           protein Y51H7C.4 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 196 KIIQKLR*FVSCRCKVPYLRGGMDQTAVF 110
           KI+QK+R F+S R   P +   + QTA++
Sbjct: 49  KILQKIRFFLSERSAAPLISMSLGQTAIY 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,922
Number of Sequences: 27780
Number of extensions: 271973
Number of successful extensions: 753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)