Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j14
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92830-8|CAB07353.1|  537|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U28928-8|AAA68340.1|  661|Caenorhabditis elegans Peroxisomal mem...    29   3.7  
Z82086-4|CAB04998.1|  329|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z92830-8|CAB07353.1|  537|Caenorhabditis elegans Hypothetical
           protein F11A5.9 protein.
          Length = 537

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 470 AGLSFTSVYMFNCVLIFGLFDLLLRFNIRFKTH 568
           + L + +VY  + V+ FGLF +L  F  RF+TH
Sbjct: 224 SSLGWPAVYYIHAVVTFGLF-VLFYFFYRFRTH 255


>U28928-8|AAA68340.1|  661|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 2 protein.
          Length = 661

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 476 LSFTSVYMFNCVLIFGLFDLLLRFNIRFKTH 568
           L+  ++ + N +L FG+ +L LRF  R  TH
Sbjct: 134 LNLPAISVTNAILKFGIAELKLRFRERLSTH 164


>Z82086-4|CAB04998.1|  329|Caenorhabditis elegans Hypothetical
           protein ZK228.7 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +2

Query: 461 SLVAGLSFTSVYMFNCVLIFGLFDLLLRFNIRFKTHKI*NKHKIDENSIKI 613
           SL+ G+  TS+ +F  V +FG+  + +      + H++ N HK  +N I+I
Sbjct: 87  SLLLGIP-TSIQVFIAVTLFGIIGVTIMLFFEDRYHRLINGHK-SKNWIRI 135


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +2

Query: 383 GDYECSEEE*ISFCGNGGRLERWMVSSLVAGLSFTSVYMFNCVLIFGLFDLLLRFNIRFK 562
           G+Y+   E  + +   G RL  WM   ++AG+ + SV  F      G FDL L+  +R+ 
Sbjct: 39  GNYKYLIENRVRYFA-GKRLFLWMSIPIIAGILWLSVRSF----ALG-FDLELKEYLRYA 92

Query: 563 THKI*NKHKIDENSIKIAIN 622
           +H   ++       I I+IN
Sbjct: 93  SHNNIHQPIFKTGFILISIN 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,688,658
Number of Sequences: 27780
Number of extensions: 299376
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)