Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j13
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   205   2e-53
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical p...    28   4.5  
AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear recep...    28   4.5  
AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear recep...    28   4.5  
Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.        27   7.9  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  205 bits (500), Expect = 2e-53
 Identities = 96/142 (67%), Positives = 113/142 (79%), Gaps = 3/142 (2%)
 Frame = +3

Query: 24  MADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 194
           M++QTE+AF KQ TV LN K  +    +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ 
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60

Query: 195 GNVSIRGRILTGVVQKMKMRRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 374
           GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  G
Sbjct: 61  GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPG 120

Query: 375 DIVTIGECRPLSKTVRFNVLKV 440
           D+VTIGECRPLSKTVRFNVLKV
Sbjct: 121 DLVTIGECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 434 QNIESNCFGQRSAFADRYNITNLHVPEARRQMYGH 330
           +++E  CF Q   F D +N+T L + +  R MY H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 96   SSCHLSCSGKRWPVSETLSLSD 31
            +SC++ CSG++W   E  S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 96   SSCHLSCSGKRWPVSETLSLSD 31
            +SC++ CSG++W   E  S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032


>Z68270-11|CAJ90499.1|  394|Caenorhabditis elegans Hypothetical
           protein ZC410.1b protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 141 TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMRRTIVIRRDYLHYLPKYNRFEKR 320
           T  + I  T+ + +CPFT N  +R         +  +R   V+  DY    P++N F   
Sbjct: 149 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 205

Query: 321 HRNM 332
            +NM
Sbjct: 206 EKNM 209


>Z68270-10|CAA92572.2|  459|Caenorhabditis elegans Hypothetical
           protein ZC410.1a protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 141 TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMRRTIVIRRDYLHYLPKYNRFEKR 320
           T  + I  T+ + +CPFT N  +R         +  +R   V+  DY    P++N F   
Sbjct: 214 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 270

Query: 321 HRNM 332
            +NM
Sbjct: 271 EKNM 274


>AY305838-1|AAR11983.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 141 TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMRRTIVIRRDYLHYLPKYNRFEKR 320
           T  + I  T+ + +CPFT N  +R         +  +R   V+  DY    P++N F   
Sbjct: 214 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 270

Query: 321 HRNM 332
            +NM
Sbjct: 271 EKNM 274


>AF083227-1|AAD03685.1|  290|Caenorhabditis elegans nuclear receptor
           NHR-11 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 141 TPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMRRTIVIRRDYLHYLPKYNRFEKR 320
           T  + I  T+ + +CPFT N  +R         +  +R   V+  DY    P++N F   
Sbjct: 166 TGMDFILDTHANLQCPFTVN-DLRPHDYRNF--RGMLRHDFVMLFDYATRFPEFNSFTSH 222

Query: 321 HRNM 332
            +NM
Sbjct: 223 EKNM 226


>Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical
           protein R06B9.1 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -1

Query: 108 ACPSSSCHLSCSGKRWPVSETLSLSDPP 25
           AC   S  LS     WP S TL L+ PP
Sbjct: 92  ACKDGSNELSAGDYVWPFSYTLPLNVPP 119


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 236 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 355
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>Z75952-2|CAB00095.1| 1100|Caenorhabditis elegans Hypothetical
           protein F29D10.4 protein.
          Length = 1100

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 234 VQKMKMRRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 359
           V+ + +R  I +RR    Y   +++F +R+  +S    PCF+
Sbjct: 605 VEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQ 646


>U52515-1|AAA97925.1| 1036|Caenorhabditis elegans hum-1 protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 234 VQKMKMRRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 359
           V+ + +R  I +RR    Y   +++F +R+  +S    PCF+
Sbjct: 542 VEYLGLRENIRVRRAGFAYRRAFDKFAQRYAIVSPQTWPCFQ 583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,592,407
Number of Sequences: 27780
Number of extensions: 237628
Number of successful extensions: 578
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)