Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1j06
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    28   5.5  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    28   5.5  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    28   5.5  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    28   5.5  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    28   5.5  
U64847-2|AAN84826.1|   62|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocyto...    28   7.3  
U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocyto...    28   7.3  
AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.      28   7.3  
Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 491 ATMFQHVYCRVRD--HTFVNVFVQQLRQVG*NHETVQWPIECVKRIIHGVILQLGCRH 658
           A +FQ     VR+  H F  +FV  +R    N   V W I+    +I  +I+ +GC +
Sbjct: 364 ANLFQMACSDVRERFHIFALLFVVMIR----NMTAVNWNIDSFTEMIPDIIMVVGCEY 417


>Z35663-1|CAA84725.1|  324|Caenorhabditis elegans Hypothetical
           protein T04A8.1 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 283 VKLIKLEKHTLCRGIVTIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLTAQTARSIRL 462
           + ++ L   TLC  +V I+F+A I     L   +    R   +  +++ +   T  SI++
Sbjct: 201 ISILHLFHFTLCFVLVIIFFVATILGLTMLKQRIKSAERSLTIVTMIMAVQTVTFASIQI 260


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical
           protein R09E10.5 protein.
          Length = 1459

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 384 PENTAYSYVSDGCIDFNSSDCPFYPLNVL*FGTIRSRRCFNTFIVVSAIT 533
           P+N   + VS G I   + + PFY +N++ FG        N  ++ S +T
Sbjct: 61  PQNPTINQVSPGQIFSGTGNNPFYGVNLVPFGPEAGDLMVNPSMLTSGMT 110


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 301 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 435
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 301 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 435
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 301 EKHTLCRGIV---TIYFIAIITMFLCLSSTVPKTRRIRMLAMVVLTLT 435
           EK TLC  I+   TI+F+ +  +    S T+P   +  +  MV++TL+
Sbjct: 287 EKVTLCISILVALTIFFLLLTEIIPATSITLPLIGKYLLFTMVMVTLS 334


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 338 YIVTIPRHSVCFSSLISFTQRPKKICQCFVCIYI-RRKI 225
           ++VT  ++ +CFS+L +       I   +VCI I RRKI
Sbjct: 172 HVVTGTKNILCFSALYTILHMTIPITPVYVCILILRRKI 210


>U64847-2|AAN84826.1|   62|Caenorhabditis elegans Hypothetical
           protein F08F3.10 protein.
          Length = 62

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +3

Query: 489 SRRCFNTFIVVSAITHS*MFSCSNSGKLVKITRPFNGPLSVLNELFTA 632
           SR  + T IV+  I H+ +F+C+N   L K  R  +  L +LNE+ +A
Sbjct: 4   SRVAWFTLIVI--IFHT-LFACTNLYLLAKFHRFLDEKLMILNEILSA 48


>U29244-9|AAN60507.1|  681|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform b
           protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 655 PTTELEYDAVNNSFNTLNGPLNG 587
           PT + +YD++  S N +NG L+G
Sbjct: 115 PTDQAKYDSIFQSLNPVNGKLSG 137


>U29244-8|AAC71084.1|  751|Caenorhabditis elegans Eps15 (endocytosis
           protein) homologoussequence protein 1, isoform a
           protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 655 PTTELEYDAVNNSFNTLNGPLNG 587
           PT + +YD++  S N +NG L+G
Sbjct: 115 PTDQAKYDSIFQSLNPVNGKLSG 137


>AY027560-1|AAK13051.1|  796|Caenorhabditis elegans EHS-1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 655 PTTELEYDAVNNSFNTLNGPLNG 587
           PT + +YD++  S N +NG L+G
Sbjct: 160 PTDQAKYDSIFQSLNPVNGKLSG 182


>Z74033-7|CAA98472.2|  325|Caenorhabditis elegans Hypothetical
           protein F38B7.4 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 486 RSRRCFNTFIVVSAITHS*MFSCSNSGKLVKITRPFNGPLSVLNELFTASYSNSVVGIHL 665
           + R  FN   +V A  +  +   ++ G  V +T      +S   E +  S SNS+   + 
Sbjct: 51  KERTAFNVICMVRAFVNLYILITNHLGLFVPMTLSGKAIVSKTLETWAISMSNSLYMANE 110

Query: 666 YLTYLNSVS 692
           YLT + SV+
Sbjct: 111 YLTVVISVN 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,742,861
Number of Sequences: 27780
Number of extensions: 249228
Number of successful extensions: 804
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)