Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1i23
         (139 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   4.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   5.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    18   9.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    18   9.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      18   9.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 24  DTKINYHF 1
           D +INYHF
Sbjct: 223 DQRINYHF 230


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 122 LCVCVFYL 99
           LCV VFYL
Sbjct: 250 LCVLVFYL 257


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 138 FFFKNFVCVC 109
           F FK+ +C C
Sbjct: 71  FAFKSIICKC 80


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -2

Query: 138 FFFKNFVCVC 109
           F FK+ +C C
Sbjct: 519 FAFKSIICKC 528


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = +1

Query: 70  DFCQTSILCDK*NTHTHKV 126
           DF   ++ CD  +   H+V
Sbjct: 30  DFVDVTLACDGRSLKAHRV 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,169
Number of Sequences: 438
Number of extensions: 420
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)