Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1i11
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.1  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   2.7  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    23   2.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    23   2.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    23   2.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    23   2.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    23   2.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    23   2.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    23   2.7  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   6.3  
DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    21   8.3  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    21   8.3  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    21   8.3  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    21   8.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   8.3  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   8.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.3  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.3  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K LHYN+
Sbjct: 318 LSNNYNYNNYNN--NYKPLHYNI 338


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 606 NLYINS*NFKELHYNL 653
           N Y N+ N+K+L+YN+
Sbjct: 315 NNYYNNNNYKKLYYNI 330


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 NLDLSIMRHYNLYINS*NFKELHYNL 653
           N + S   +YN   N  N+K+L+YN+
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNI 113


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 NLDLSIMRHYNLYINS*NFKELHYNL 653
           N + S   +YN   N  N+K+L+YN+
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNI 113


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 NLDLSIMRHYNLYINS*NFKELHYNL 653
           N + S   +YN   N  N+K+L+YN+
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNI 113


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 NLDLSIMRHYNLYINS*NFKELHYNL 653
           N + S   +YN   N  N+K+L+YN+
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNI 113


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 NLDLSIMRHYNLYINS*NFKELHYNL 653
           N + S   +YN   N  N+K+L+YN+
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNI 113


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 NLDLSIMRHYNLYINS*NFKELHYNL 653
           N + S   +YN   N  N+K+L+YN+
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNI 113


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 NLDLSIMRHYNLYINS*NFKELHYNL 653
           N + S   +YN   N  N+K+L+YN+
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNI 113


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 576 NLDLSIMRHYNLYINS*NFKELHYNL 653
           N + S   +YN   N  N+K+L+YN+
Sbjct: 88  NYNYSNYNNYNNNNNYNNYKKLYYNI 113


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNLM 656
           LS   +YN Y N  N+K L+YN++
Sbjct: 318 LSNNYNYNNYNN--NYKPLYYNII 339


>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K L+YN+
Sbjct: 85  LSNNYNYNNYNN--NYKPLYYNI 105


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K L+YN+
Sbjct: 85  LSNNYNYNNYNN--NYKPLYYNI 105


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K L+YN+
Sbjct: 85  LSNNYNYNNYNN--NYKPLYYNI 105


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K L+YN+
Sbjct: 85  LSNNYNYNNYNN--NYKPLYYNI 105


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K L+YN+
Sbjct: 318 LSNNYNYNNYNN--NYKPLYYNI 338


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K L+YN+
Sbjct: 318 LSNNYNYNNYNN--NYKPLYYNI 338


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K L+YN+
Sbjct: 318 LSNNYNYNNYNN--NYKPLYYNI 338


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 585 LSIMRHYNLYINS*NFKELHYNL 653
           LS   +YN Y N  N+K L+YN+
Sbjct: 307 LSNNYNYNNYNN--NYKPLYYNI 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,474
Number of Sequences: 438
Number of extensions: 3831
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)