Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1i10
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z77656-1|CAB01141.2|  350|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    28   6.0  

>Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.5 protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 371 SITFTHIHITTGQLVKL-FIWLSVKKIWDNNFTTNN 267
           ++ F  + ITT  L+   F WL+++ +W NN  +N+
Sbjct: 27  TMKFNFLFITTVILLSYCFTWLAIRALWKNNIFSNS 62


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 676 YFIHVSNNFNRYQTLKYYYYIPRNRAN 596
           Y+ + +NN+N       YYY P N  N
Sbjct: 23  YYYYPNNNYNNNNGYTTYYYYPNNNNN 49


>Z77656-1|CAB01141.2|  350|Caenorhabditis elegans Hypothetical
           protein F07B10.2 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +2

Query: 434 VFVFNIIVFCLF*DSKIVKRNFKN*IIKMLIYLLHYNFKYLVSKLMLIVHFY 589
           +F  ++++  +F  S  +K  +KN +I + I+ + Y+F  ++  L  ++H Y
Sbjct: 22  IFSNSVLLSLIFSSSSPIKGAYKNMLIVLCIFTMFYSFVEIM--LQPLIHIY 71


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -2

Query: 514 NNLILKISFYYFTILKQTKNDNIKHKNPPIRLAQRSKIDTSNL 386
           N  I+K+   Y   LKQ +   +KH NPP R   R K+D  NL
Sbjct: 486 NISIIKVKDVY--CLKQDEK-LLKHCNPPDRFILRMKVDRINL 525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,167
Number of Sequences: 27780
Number of extensions: 291908
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)