Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1i08
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...   163   2e-41
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.1  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.1  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   3.6  
SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S...    26   6.3  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   8.4  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    25   8.4  

>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score =  163 bits (396), Expect = 2e-41
 Identities = 97/250 (38%), Positives = 134/250 (53%), Gaps = 12/250 (4%)
 Frame = +2

Query: 2    QTETIAPR---SKPPTLLKRLTEVRPENLDYLGTSFGLTEDLLRFWKSQKYVPVYLSQKA 172
            QTE I  R   + PP LLK L+E++PE L Y+G S+GLT  L +FWK + Y P+YL Q A
Sbjct: 681  QTEKIHVRDAKTMPPLLLK-LSELQPEPLHYVGVSYGLTPSLQKFWKREGYCPLYLRQTA 739

Query: 173  NELTGEHSCIMLRAL--RDAAWLGAYSADFXXXXXXXXXXXXXXXXXXXXXSTL-----V 331
            N+LTGEH+C+MLR L  RD+ WLGA++ +F                     S L      
Sbjct: 740  NDLTGEHTCVMLRVLEGRDSEWLGAFAQNFYRRFLSLLGYQFREFAAITALSVLDACNNG 799

Query: 332  TDSVKVNKPVLTKDLIEQYLTGHDLSRLEAYSKQQADYRLITDLLQPLAELVFHTK--ST 505
            T  V  +   LT + I      +DL RLE+YS    DY +I DLL  LA L F  K   +
Sbjct: 800  TKYVVNSTSKLTNEEINNVFESYDLKRLESYSNNLLDYHVIVDLLPKLAHLYFSGKFPDS 859

Query: 506  IKLDAVQKVIFIAMGFQMKDVDDIASELGLPGSQILAKFYEASKKINAALNAVLEDSAAK 685
            +KL  VQ+ + +A+G Q K +D +  E  LP +Q+LA   + SKKI   ++ +      +
Sbjct: 860  VKLSPVQQSVLLALGLQYKTIDTLEKEFNLPSNQLLAMLVKLSKKIMKCIDEIETKDIEE 919

Query: 686  EIGIEDKAAS 715
            E+G   K  S
Sbjct: 920  ELGSNKKTES 929


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 628  GLEEDQRGSERGSRRFCRERDR 693
            G+    RGS+RGSRR   ERD+
Sbjct: 938  GMSGSHRGSQRGSRRGGGERDK 959


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 401 DLSRLEAYSKQQADYRLITDLLQPLAE 481
           D+ +LE Y+    D+R+++  L+PL+E
Sbjct: 328 DIVQLEEYNSYLLDHRIVSAFLKPLSE 354


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 53  LTEVRPENLDYLGTSFGLTEDLLRF-WKSQKYVPVYLSQKANELTGEHSCIMLR 211
           L  V   +LD +GTS  L + LLR+ W S     + +SQ          CI  R
Sbjct: 375 LAFVNSMSLDIIGTSTILDKSLLRWDWYSNSLAAIGVSQTVFPFISSSLCISPR 428


>SPAC19B12.09 |srp14||signal recognition particle subunit
           Srp14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 113 DLLRFWKSQKYVPVYLSQKAN---ELTGEHSCIMLRALRDAA 229
           DLL+  +S+    VYLSQK N   E  G  + +++RA   AA
Sbjct: 14  DLLQTHQSKGTGSVYLSQKCNPVDEGEGSSASVLIRAKSGAA 55


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 422 YSKQQADYRLITDLLQP-LAELVFHTKSTIKLDAVQKVIFIAMGFQMKDVDDI 577
           +SK   D+ +  + ++  L E++   K   K+D++QK ++I    + ++ +DI
Sbjct: 324 FSKIAVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPSSEPENFEDI 376


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 533 IFIAMGFQMKDVDDIASELGLPGSQILAKFYEASK-KIN 646
           I IA     K++ D+ASE+G+  S++  +FY + K K+N
Sbjct: 314 IEIARSQTPKNIGDLASEIGIAKSEL--EFYGSHKAKVN 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,138
Number of Sequences: 5004
Number of extensions: 41435
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)