Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1i08
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 73 2e-13
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 31 0.71
10_07_0019 + 11931519-11932310 31 0.94
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 30 2.2
03_03_0198 + 15361048-15361746,15361854-15361946,15362035-153621... 30 2.2
09_02_0526 + 10219803-10221107 29 3.8
04_01_0399 - 5214183-5214206,5215437-5215502,5219537-5219635,521... 29 3.8
07_03_0266 - 16015949-16016524,16016746-16016782,16017274-160178... 28 8.7
01_05_0737 - 24780952-24781100,24781515-24783453 28 8.7
>12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 73.3 bits (172), Expect = 2e-13
Identities = 41/110 (37%), Positives = 55/110 (50%)
Frame = +2
Query: 362 LTKDLIEQYLTGHDLSRLEAYSKQQADYRLITDLLQPLAELVFHTKSTIKLDAVQKVIFI 541
+T ++ L+ HD+ RLEAYS DY LI DL+ LA F K + L Q +
Sbjct: 697 ITSKILGDMLSPHDMKRLEAYSNNLVDYHLILDLVPILAHQYFSEKLPVTLHGAQAAVLF 756
Query: 542 AMGFQMKDVDDIASELGLPGSQILAKFYEASKKINAALNAVLEDSAAKEI 691
MG Q KD+ ELG+ Q+L+ F + KK L L + A KEI
Sbjct: 757 CMGLQDKDIGATKEELGIEREQVLSNFIKTMKK----LYGYLHNIAGKEI 802
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 31.5 bits (68), Expect = 0.71
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 583 RTGPARLSDPGEVLRGLEEDQRGSERGSRRFCRERDRNRGQGGLG 717
R G R S G G ++++RGS+R R+RDR+R +GG G
Sbjct: 28 RAGSRRRSSGG----GRDDEERGSKRSRSGEDRDRDRDRHRGGGG 68
>10_07_0019 + 11931519-11932310
Length = 263
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -1
Query: 185 PSARSPFDSDKPERIS----ATSRTSTDLR*DRSWCRGSPSSRAG 63
P+ R+ D D+ R S A R + LR R WCR P+SR G
Sbjct: 10 PARRNDDDDDEHRRGSVEGEARPRATLPLRCRRWWCRSEPTSRGG 54
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 29.9 bits (64), Expect = 2.2
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Frame = +2
Query: 326 LVTDSVKVNKPVLTKDLIEQYLTGHDLSRLEAYSKQQA-DYRLITDLLQPLAELVFHTKS 502
LVTD++ P++T + + D +LE+ + Q + D RL Q + + S
Sbjct: 1953 LVTDTLPSTAPIITAEAMSVDDRNEDNEQLESDTTQSSVDDRLQQADQQSVKGSIDSRGS 2012
Query: 503 TIKLDA-VQKVIFIAMGFQMKDVD-----DIASELGLPGSQILAKFYEASKKINAALNAV 664
I D + + IA G+ D D ++ S + P + F SK+IN +
Sbjct: 2013 GISADRNLVRSTVIAPGYVPSDADERIIVELPSSMVRPLKVVRGTFQVTSKRINFII--- 2069
Query: 665 LEDSAAKEIGIEDKAAS 715
D +A E ++D A++
Sbjct: 2070 --DESASESNMDDHAST 2084
>03_03_0198 +
15361048-15361746,15361854-15361946,15362035-15362102,
15362255-15362393,15362481-15362483
Length = 333
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 728 AAPRPRPPCPLFLSLSRQNLL 666
AAPR RPPC L SL+R L
Sbjct: 17 AAPRRRPPCVLSFSLARDRFL 37
>09_02_0526 + 10219803-10221107
Length = 434
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -1
Query: 122 STDLR*DRSWCRGSPSSRAGLLSNVSAE*AVSISERWSL 6
+TD +W R SPS R L+ V A AV+ S+R+SL
Sbjct: 60 ATDTGIFANWSRPSPSCRVSSLAFVPAAAAVTSSKRFSL 98
>04_01_0399 -
5214183-5214206,5215437-5215502,5219537-5219635,
5219746-5219817,5219918-5220491,5220575-5220687,
5220842-5220941,5221059-5221181,5221268-5221335,
5221461-5221610,5221715-5221858,5222097-5222288,
5222710-5222794,5222892-5223043,5223138-5223296,
5223552-5223605,5223698-5223836,5223955-5224088,
5224200-5225117
Length = 1121
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 590 GLPGSQILAKFYEASKKINAALNAVLEDSAAKEIGIEDK 706
GLP ++++A A+NA+L+D+ A G+EDK
Sbjct: 29 GLPEARVVAAISRCGGNAERAINALLDDATA---GVEDK 64
>07_03_0266 -
16015949-16016524,16016746-16016782,16017274-16017884,
16018004-16018081,16018117-16018143
Length = 442
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 37 YSAETFDRSPARELGLPRHQLRSHRRSVEVLEVAEIRSG 153
++A+TF A + LP H +R HRR +RSG
Sbjct: 382 FAADTFALCAADDYRLPAHGVRRHRRGRVRRHHRRVRSG 420
>01_05_0737 - 24780952-24781100,24781515-24783453
Length = 695
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Frame = +1
Query: 394 RTRPVQARGLL----QATGRLQAHHGPAAAAG----RTRLPH*VDHQAGCSSEGNLHSNG 549
R+RP + G L +A G+ GP R PH G + +L +NG
Sbjct: 622 RSRPASSDGRLPTAKKADGKAPRQAGPQPKVKPVNTAARTPHSARRALGVKPDDHLQTNG 681
Query: 550 IPNERRR 570
P RRR
Sbjct: 682 APTARRR 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,924,813
Number of Sequences: 37544
Number of extensions: 323166
Number of successful extensions: 1194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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