Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1i08
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...   143   1e-34
U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatos...    31   0.84 
U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatos...    31   0.84 
U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatos...    31   0.84 
AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical...    30   1.5  
Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC006627-5|AAO38662.1|  529|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    28   5.9  
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        28   5.9  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
            protein F55A12.8 protein.
          Length = 1043

 Score =  143 bits (347), Expect = 1e-34
 Identities = 87/252 (34%), Positives = 129/252 (51%), Gaps = 16/252 (6%)
 Frame = +2

Query: 8    ETIAPRSKPPTLLKRLTEVRPENLDYLGTSFGLTEDLLRFWKSQKYVPVYLSQKANELTG 187
            E I PR+  P LL+RL E +PE LDYLG SFGLT  LL+FWK  ++VPVY+ Q +N++TG
Sbjct: 681  ERIEPRADLPPLLQRLDERKPERLDYLGVSFGLTVPLLKFWKRNEFVPVYIRQNSNDITG 740

Query: 188  EHSCIMLRALR----------DAAWLGAYSADFXXXXXXXXXXXXXXXXXXXXXSTLVTD 337
            EH+CI+L+ L            A WL  Y  +F                     S L   
Sbjct: 741  EHTCIILKGLEHGGSDSDEEPSATWLPVYWREFRRRIVNLLSFDFSSFPAQMALSLLQLK 800

Query: 338  SVKVNKP----VLTKDLIEQYLTGHDLSRLEAYSKQQADYRLITDLLQPLAELVFHTK-- 499
            +  V K     V+ +  +  +L+  DL R+  Y +   D  +ITD+L  +A+L F  +  
Sbjct: 801  NKHVEKQMKRLVIERSELAIHLSNTDLRRMSQYGRNMVDSHIITDILPIVAKLNFEQRLP 860

Query: 500  STIKLDAVQKVIFIAMGFQMKDVDDIASELGLPGSQILAKFYEASKKINAALNAVLEDSA 679
              +KL   Q  I +A G Q K  +DI+ EL LP +QI A   +A ++I    + V E + 
Sbjct: 861  QELKLAVTQSAILLARGLQHKHFEDISKELDLPMNQIFALLTKAIRRIGDWFDEVCETAV 920

Query: 680  AKEIGIEDKAAS 715
             + +  E +A++
Sbjct: 921  RENLDKEAEASA 932


>U10414-4|AAW30666.1|  641|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform c protein.
          Length = 641

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 40  SAETFDRSPARELGLPRHQLRSHRRSVEVLEVAEIRSGLSESKGERADGRALV 198
           S ET   S   +L +  H L   RR  + LEV ++RS   E K  RA  +A V
Sbjct: 279 SRETSIDSSILDLCIGTHNLYLRRRQPDTLEVQQMRSQAKEDKQRRAAEQAKV 331


>U10414-3|AAK68385.1|  709|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform b protein.
          Length = 709

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 40  SAETFDRSPARELGLPRHQLRSHRRSVEVLEVAEIRSGLSESKGERADGRALV 198
           S ET   S   +L +  H L   RR  + LEV ++RS   E K  RA  +A V
Sbjct: 279 SRETSIDSSILDLCIGTHNLYLRRRQPDTLEVQQMRSQAKEDKQRRAAEQAKV 331


>U10414-2|AAA19073.1|  654|Caenorhabditis elegans Neurofibromatosis
           homolog protein1, isoform a protein.
          Length = 654

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 40  SAETFDRSPARELGLPRHQLRSHRRSVEVLEVAEIRSGLSESKGERADGRALV 198
           S ET   S   +L +  H L   RR  + LEV ++RS   E K  RA  +A V
Sbjct: 279 SRETSIDSSILDLCIGTHNLYLRRRQPDTLEVQQMRSQAKEDKQRRAAEQAKV 331


>AC024859-13|AAK29965.2|  338|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.17 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 526 EGNLHSNGIPNERRR*HSVRTGPARLSDPGEVLRGLEEDQRGSERGSRRFCRER-DRN 696
           +GN  SN + N+ R  ++ +   +R+   G V++ ++ED  G+E  +RR    R +RN
Sbjct: 94  QGNGISNFMINKGRAKNNEKMSRSRMDAGGVVIQPVDEDDGGNELSTRRLAGVRFERN 151


>Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical
           protein B0001.2 protein.
          Length = 926

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 56  TEVRPENLDYLGTSFGLTEDLLRFWKSQKYVPVYLSQKANELTGEHSCIMLRALRDAAWL 235
           TEVR + ++  G +  LT  L  F+K++++  V    +A    G +  I++  L +   +
Sbjct: 67  TEVRTDTVEVSGDTGVLTSGLAPFYKTKEFGDVACKGQAPGEAGTNHNIIVSRLPEEQRI 126

Query: 236 GAYS 247
           G YS
Sbjct: 127 GLYS 130


>AC006627-5|AAO38662.1|  529|Caenorhabditis elegans Hypothetical
           protein E01A2.2b protein.
          Length = 529

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 637 EDQRGSERGSRR-FCRERDRNRGQGGLGRGA 726
           +D RG   G R  + RERD +RG GG GR +
Sbjct: 450 DDHRGGGGGERGGYGRERDDDRGPGGGGRNS 480


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 637 EDQRGSERGSRR-FCRERDRNRGQGGLGRGA 726
           +D RG   G R  + RERD +RG GG GR +
Sbjct: 633 DDHRGGGGGERGGYGRERDDDRGPGGGGRNS 663


>Z81525-8|CAB04257.1|  208|Caenorhabditis elegans Hypothetical
           protein F33A8.3 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 27/87 (31%), Positives = 33/87 (37%)
 Frame = +1

Query: 457 GPAAAAGRTRLPH*VDHQAGCSSEGNLHSNGIPNERRR*HSVRTGPARLSDPGEVLRGLE 636
           G     GR  + H  D  +  + EG     G     RR    R G    S   E  R  +
Sbjct: 117 GRGRRGGRGGIRH--DSGSRDAEEGGAPRGGGRGGSRRGGGGRGGGRTNSGGEETARDTD 174

Query: 637 EDQRGSERGSRRFCRERDRNRGQGGLG 717
             +RG   G RR  R R   RG+GG G
Sbjct: 175 GGERGGRGGGRRGGRGRG-GRGRGGRG 200


>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 559 ERRR*HSVRTGPARLSDPGEVLR--GLEEDQRGSERGSRRFCRERDRNRG-QGGLG 717
           E ++ + V+ G +  SD  E +R    E+D   SERGS    R +DR RG +GG G
Sbjct: 108 ETKKQNRVQLGDS--SDEDEPIRRPNHEDDDLLSERGSDDGDRRKDRGRGDRGGYG 161


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
           protein T04A8.14 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 559 ERRR*HSVRTGPARLSDPGEVLR--GLEEDQRGSERGSRRFCRERDRNRG-QGGLG 717
           E ++ + V+ G +  SD  E +R    E+D   SERGS    R +DR RG +GG G
Sbjct: 108 ETKKQNRVQLGDS--SDEDEPIRRPNHEDDDLLSERGSDDGDRRKDRGRGDRGGYG 161


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +1

Query: 559 ERRR*HSVRTGPARLSDPGEVLR--GLEEDQRGSERGSRRFCRERDRNRG-QGGLG 717
           E ++ + V+ G +  SD  E +R    E+D   SERGS    R +DR RG +GG G
Sbjct: 108 ETKKQNRVQLGDS--SDEDEPIRRPNHEDDDLLSERGSDDGDRRKDRGRGDRGGYG 161


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 556 LESHCYEDYLLNCIQLD 506
           +ESHC+E+ + NC  LD
Sbjct: 264 IESHCFEELIKNCEDLD 280


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 544 NGIPNERRR*HSVRT----GPARLSDPGEVLRGLEEDQRGS-ERGSRRFCRERDRNR 699
           NG   +RRR  S R      P R  D  +  R  + D+R S +R SR   R+RDR+R
Sbjct: 266 NGDDRDRRRSRSPRRRRSPSPRRRRDSRDRDRDRDRDRRRSRDRRSRSRDRDRDRDR 322


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 544 NGIPNERRR*HSVRT----GPARLSDPGEVLRGLEEDQRGS-ERGSRRFCRERDRNR 699
           NG   +RRR  S R      P R  D  +  R  + D+R S +R SR   R+RDR+R
Sbjct: 266 NGDDRDRRRSRSPRRRRSPSPRRRRDSRDRDRDRDRDRRRSRDRRSRSRDRDRDRDR 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,982
Number of Sequences: 27780
Number of extensions: 244499
Number of successful extensions: 895
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)