Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1i08
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   5.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.0  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 38  TLLKRLTEVRPENLDYLGTSFGLTE 112
           T  K+ TE++ +NLD L   F   E
Sbjct: 73  TQCKKCTEIQKQNLDKLAEWFTTNE 97


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 559 HLESHCYED 533
           HLE+HCY D
Sbjct: 242 HLEAHCYFD 250


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 38  TLLKRLTEVRPENLDYLGTSFGLTE 112
           T  K+ TE++ +NLD L   F   E
Sbjct: 73  TQCKKCTEIQKQNLDKLAEWFTTNE 97


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 384 ST*PDTTCPGSRPTPSNRPTTGSSRTC 464
           ST P        P P N P +GS   C
Sbjct: 84  STSPSGQNKAVAPYPPNHPLSGSKHLC 110


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 384 ST*PDTTCPGSRPTPSNRPTTGSSRTC 464
           ST P        P P N P +GS   C
Sbjct: 84  STSPSGQNKAVAPYPPNHPLSGSKHLC 110


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 352 QTRADKGLDRAVPDRTRPVQARGLLQATGR 441
           Q  + K   RAV   TR   ARG+L+A  R
Sbjct: 189 QRLSKKANARAVVLFTRAEDARGILEAARR 218


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 352 QTRADKGLDRAVPDRTRPVQARGLLQATGR 441
           Q  + K   RAV   TR   ARG+L+A  R
Sbjct: 279 QRLSKKANARAVVLFTRAEDARGILEAARR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,603
Number of Sequences: 438
Number of extensions: 3111
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)