Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1i01
(674 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY311388-1|AAP74958.1| 2551|Homo sapiens FEX2 protein. 35 0.23
AY227444-1|AAO39681.1| 1416|Homo sapiens hyaluronan receptor for... 35 0.23
AK074051-1|BAB84877.1| 1736|Homo sapiens FLJ00122 protein protein. 35 0.23
AK024503-1|BAB15793.1| 1192|Homo sapiens FLJ00112 protein protein. 35 0.23
AJ295695-1|CAC82105.1| 2551|Homo sapiens stabilin-2 protein. 35 0.23
AF160476-1|AAF82398.1| 897|Homo sapiens CD44-like precursor FEL... 35 0.23
AB052958-1|BAC15608.1| 2551|Homo sapiens FELE-2 protein. 35 0.23
M55210-1|AAA59492.1| 1609|Homo sapiens laminin B2 chain protein. 33 1.2
J03202-1|AAA59488.1| 1609|Homo sapiens LAMB2 protein. 33 1.2
AL450304-5|CAI14877.1| 1609|Homo sapiens laminin, gamma 1 (forme... 33 1.2
AL354953-3|CAH70981.1| 1609|Homo sapiens laminin, gamma 1 (forme... 33 1.2
U97669-1|AAB91371.1| 2321|Homo sapiens Notch3 protein. 32 1.6
AF058900-1|AAC14346.1| 2321|Homo sapiens Notch3 protein. 32 1.6
AC004663-1|AAC15789.1| 2281|Homo sapiens Notch 3 protein. 32 1.6
U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein. 32 2.1
D87433-1|BAA13377.2| 2589|Homo sapiens KIAA0246 protein protein. 32 2.1
DQ786774-1|ABG91068.1| 2570|Homo sapiens FEX1 protein. 32 2.1
BC150250-1|AAI50251.1| 2570|Homo sapiens stabilin 1 protein. 32 2.1
AJ275213-1|CAB61827.1| 2570|Homo sapiens stabilin-1 protein. 32 2.1
AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced prote... 32 2.1
AB052956-1|BAC15606.1| 2570|Homo sapiens FELE-1 protein. 32 2.1
AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein. 32 2.1
Y14330-1|CAA74706.1| 1223|Homo sapiens jagged2 protein protein. 31 2.8
AF111170-2|AAD15562.1| 1238|Homo sapiens Jagged2 protein. 31 2.8
AF029779-1|AAB84216.1| 1200|Homo sapiens hJAG2.del-E6 protein. 31 2.8
AF029778-1|AAB84215.1| 1238|Homo sapiens Jagged2 protein. 31 2.8
AF020201-1|AAB71189.1| 1238|Homo sapiens Jagged 2 protein. 31 2.8
AF003521-1|AAB61285.1| 1238|Homo sapiens Jagged 2 protein. 31 2.8
X78565-1|CAA55309.1| 2201|Homo sapiens human tenascin-C protein. 31 3.7
X71923-1|CAA50739.1| 750|Homo sapiens tenascin-X precursor prot... 31 3.7
X56160-1|CAA39628.1| 2199|Homo sapiens tenascin protein. 31 3.7
U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein. 31 3.7
M55618-1|AAA88083.1| 2203|Homo sapiens hexabrachion protein. 31 3.7
M24630-1|AAA52703.1| 1625|Homo sapiens hexabrachion protein. 31 3.7
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 31 3.7
AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein. 31 3.7
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.7
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.7
AL445650-3|CAH70620.1| 1546|Homo sapiens Usher syndrome 2A (auto... 31 3.7
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.7
AL358858-1|CAH71587.1| 1546|Homo sapiens Usher syndrome 2A (auto... 31 3.7
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.7
AL162425-1|CAI15110.1| 2201|Homo sapiens tenascin C (hexabrachio... 31 3.7
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.7
AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB... 31 3.7
AF091889-1|AAF75819.1| 1546|Homo sapiens Usher syndrome type IIa... 31 3.7
AF055580-1|AAC23748.2| 1546|Homo sapiens Usher syndrome type IIa... 31 3.7
AB210038-1|BAE06120.1| 2233|Homo sapiens TNC variant protein pro... 31 3.7
Z37976-1|CAA86030.1| 1821|Homo sapiens LTBP-2 precursor protein. 31 4.9
S82451-1|AAB37459.1| 1821|Homo sapiens latent transforming growt... 31 4.9
BC078659-1|AAH78659.1| 1821|Homo sapiens latent transforming gro... 31 4.9
AB209865-1|BAD93102.1| 1700|Homo sapiens latent transforming gro... 31 4.9
AL138836-3|CAC22313.2| 602|Homo sapiens multiple EGF-like-domai... 30 8.6
>AY311388-1|AAP74958.1| 2551|Homo sapiens FEX2 protein.
Length = 2551
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTE 605
DC +P GC+ HG+ DD + S +C+C+ G+ + DT+
Sbjct: 2008 DC-LPCGCSDHGQCDDGITGSGQCLCETGWTGP-SCDTQ 2044
>AY227444-1|AAO39681.1| 1416|Homo sapiens hyaluronan receptor for
endocytosis precursor protein.
Length = 1416
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTE 605
DC +P GC+ HG+ DD + S +C+C+ G+ + DT+
Sbjct: 873 DC-LPCGCSDHGQCDDGITGSGQCLCETGWTGP-SCDTQ 909
>AK074051-1|BAB84877.1| 1736|Homo sapiens FLJ00122 protein protein.
Length = 1736
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTE 605
DC +P GC+ HG+ DD + S +C+C+ G+ + DT+
Sbjct: 1193 DC-LPCGCSDHGQCDDGITGSGQCLCETGWTGT-SCDTQ 1229
>AK024503-1|BAB15793.1| 1192|Homo sapiens FLJ00112 protein protein.
Length = 1192
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTE 605
DC +P GC+ HG+ DD + S +C+C+ G+ + DT+
Sbjct: 649 DC-LPCGCSDHGQCDDGITGSGQCLCETGWTGP-SCDTQ 685
>AJ295695-1|CAC82105.1| 2551|Homo sapiens stabilin-2 protein.
Length = 2551
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTE 605
DC +P GC+ HG+ DD + S +C+C+ G+ + DT+
Sbjct: 2008 DC-LPCGCSDHGQCDDGITGSGQCLCETGWTGP-SCDTQ 2044
>AF160476-1|AAF82398.1| 897|Homo sapiens CD44-like precursor FELL
protein.
Length = 897
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTE 605
DC +P GC+ HG+ DD + S +C+C+ G+ + DT+
Sbjct: 354 DC-LPCGCSDHGQCDDGITGSGQCLCETGWTGP-SCDTQ 390
>AB052958-1|BAC15608.1| 2551|Homo sapiens FELE-2 protein.
Length = 2551
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTE 605
DC +P GC+ HG+ DD + S +C+C+ G+ + DT+
Sbjct: 2008 DC-LPCGCSDHGQCDDGITGSGQCLCETGWTGP-SCDTQ 2044
>M55210-1|AAA59492.1| 1609|Homo sapiens laminin B2 chain protein.
Length = 1609
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 501 PVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
P C P G ID+ N + RCVC D V +N + P
Sbjct: 444 PCSCDPSGSIDECNVETGRCVCKDN-VEGFNCERCKP 479
>J03202-1|AAA59488.1| 1609|Homo sapiens LAMB2 protein.
Length = 1609
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 501 PVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
P C P G ID+ N + RCVC D V +N + P
Sbjct: 444 PCSCDPSGSIDECNVETGRCVCKDN-VEGFNCERCKP 479
>AL450304-5|CAI14877.1| 1609|Homo sapiens laminin, gamma 1 (formerly
LAMB2) protein.
Length = 1609
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 501 PVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
P C P G ID+ N + RCVC D V +N + P
Sbjct: 444 PCSCDPSGSIDECNIETGRCVCKDN-VEGFNCERCKP 479
>AL354953-3|CAH70981.1| 1609|Homo sapiens laminin, gamma 1 (formerly
LAMB2) protein.
Length = 1609
Score = 32.7 bits (71), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 501 PVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
P C P G ID+ N + RCVC D V +N + P
Sbjct: 444 PCSCDPSGSIDECNIETGRCVCKDN-VEGFNCERCKP 479
>U97669-1|AAB91371.1| 2321|Homo sapiens Notch3 protein.
Length = 2321
Score = 32.3 bits (70), Expect = 1.6
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 414 ETETGFALLCSCLR--PGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSD 587
E+ G +CSC + G Q ++ ++C P C PHG ++ + S C C GY
Sbjct: 787 ESAPGQLPVCSCPQGWQGPRCQQDV-DECAGPAPCGPHGICTNL-AGSFSCTCHGGYTGP 844
Query: 588 YNADTETPYCRP 623
+ D + C P
Sbjct: 845 -SCDQDINDCDP 855
>AF058900-1|AAC14346.1| 2321|Homo sapiens Notch3 protein.
Length = 2321
Score = 32.3 bits (70), Expect = 1.6
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 414 ETETGFALLCSCLR--PGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSD 587
E+ G +CSC + G Q ++ ++C P C PHG ++ + S C C GY
Sbjct: 787 ESAPGQLPVCSCPQGWQGPRCQQDV-DECAGPAPCGPHGICTNL-AGSFSCTCHGGYTGP 844
Query: 588 YNADTETPYCRP 623
+ D + C P
Sbjct: 845 -SCDQDINDCDP 855
>AC004663-1|AAC15789.1| 2281|Homo sapiens Notch 3 protein.
Length = 2281
Score = 32.3 bits (70), Expect = 1.6
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 414 ETETGFALLCSCLR--PGLVTQLNMYEDCNVPVGCAPHGRIDDINSASIRCVCDDGYVSD 587
E+ G +CSC + G Q ++ ++C P C PHG ++ + S C C GY
Sbjct: 747 ESAPGQLPVCSCPQGWQGPRCQQDV-DECAGPAPCGPHGICTNL-AGSFSCTCHGGYTGP 804
Query: 588 YNADTETPYCRP 623
+ D + C P
Sbjct: 805 -SCDQDINDCDP 815
>U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein.
Length = 2798
Score = 31.9 bits (69), Expect = 2.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 379 RVTPTRVCGCWPKLKLVSLFCAVAYGP-DLL-RSLTCTKIATCP 504
R +PT C CW K K +L DLL R LT T + T P
Sbjct: 1224 RTSPTAYCDCWEKCKCKTLIAGQKSARLDLLYRLLTATNLVTLP 1267
>D87433-1|BAA13377.2| 2589|Homo sapiens KIAA0246 protein protein.
Length = 2589
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 507 GCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
GC+PH + C C DGY+ D E C
Sbjct: 1484 GCSPHANCTKVAPGQRTCTCQDGYMGDGELCQEINSC 1520
>DQ786774-1|ABG91068.1| 2570|Homo sapiens FEX1 protein.
Length = 2570
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 507 GCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
GC+PH + C C DGY+ D E C
Sbjct: 1465 GCSPHANCTKVAPGQRTCTCQDGYMGDGELCQEINSC 1501
>BC150250-1|AAI50251.1| 2570|Homo sapiens stabilin 1 protein.
Length = 2570
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 507 GCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
GC+PH + C C DGY+ D E C
Sbjct: 1465 GCSPHANCTKVAPGQRTCTCQDGYMGDGELCQEINSC 1501
>AJ275213-1|CAB61827.1| 2570|Homo sapiens stabilin-1 protein.
Length = 2570
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 507 GCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
GC+PH + C C DGY+ D E C
Sbjct: 1465 GCSPHANCTKVAPGQRTCTCQDGYMGDGELCQEINSC 1501
>AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced protein
protein.
Length = 2799
Score = 31.9 bits (69), Expect = 2.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 379 RVTPTRVCGCWPKLKLVSLFCAVAYGP-DLL-RSLTCTKIATCP 504
R +PT C CW K K +L DLL R LT T + T P
Sbjct: 1225 RTSPTAYCDCWEKCKCKTLIAGQKSARLDLLYRLLTATNLVTLP 1268
>AB052956-1|BAC15606.1| 2570|Homo sapiens FELE-1 protein.
Length = 2570
Score = 31.9 bits (69), Expect = 2.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 507 GCAPHGRIDDINSASIRCVCDDGYVSDYNADTETPYC 617
GC+PH + C C DGY+ D E C
Sbjct: 1465 GCSPHANCTKVAPGQRTCTCQDGYMGDGELCQEINSC 1501
>AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein.
Length = 2820
Score = 31.9 bits (69), Expect = 2.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 379 RVTPTRVCGCWPKLKLVSLFCAVAYGP-DLL-RSLTCTKIATCP 504
R +PT C CW K K +L DLL R LT T + T P
Sbjct: 1247 RTSPTAYCDCWEKCKCKTLIAGQKSARLDLLYRLLTATNLVTLP 1290
>Y14330-1|CAA74706.1| 1223|Homo sapiens jagged2 protein protein.
Length = 1223
Score = 31.5 bits (68), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDY 590
C PHGR + C+CD G+ Y
Sbjct: 591 CGPHGRCVSQPGGNFSCICDSGFTGTY 617
>AF111170-2|AAD15562.1| 1238|Homo sapiens Jagged2 protein.
Length = 1238
Score = 31.5 bits (68), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDY 590
C PHGR + C+CD G+ Y
Sbjct: 606 CGPHGRCVSQPGGNFSCICDSGFTGTY 632
>AF029779-1|AAB84216.1| 1200|Homo sapiens hJAG2.del-E6 protein.
Length = 1200
Score = 31.5 bits (68), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDY 590
C PHGR + C+CD G+ Y
Sbjct: 568 CGPHGRCVSQPGGNFSCICDSGFTGTY 594
>AF029778-1|AAB84215.1| 1238|Homo sapiens Jagged2 protein.
Length = 1238
Score = 31.5 bits (68), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDY 590
C PHGR + C+CD G+ Y
Sbjct: 606 CGPHGRCVSQPGGNFSCICDSGFTGTY 632
>AF020201-1|AAB71189.1| 1238|Homo sapiens Jagged 2 protein.
Length = 1238
Score = 31.5 bits (68), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDY 590
C PHGR + C+CD G+ Y
Sbjct: 606 CGPHGRCVSQPGGNFSCICDSGFTGTY 632
>AF003521-1|AAB61285.1| 1238|Homo sapiens Jagged 2 protein.
Length = 1238
Score = 31.5 bits (68), Expect = 2.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +3
Query: 510 CAPHGRIDDINSASIRCVCDDGYVSDY 590
C PHGR + C+CD G+ Y
Sbjct: 606 CGPHGRCVSQPGGNFSCICDSGFTGTY 632
>X78565-1|CAA55309.1| 2201|Homo sapiens human tenascin-C protein.
Length = 2201
Score = 31.1 bits (67), Expect = 3.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
D + P C HGR +N CVCDDGY + D + P
Sbjct: 467 DMSCPNDCHQHGRC--VNGM---CVCDDGYTGEDCRDRQCP 502
>X71923-1|CAA50739.1| 750|Homo sapiens tenascin-X precursor
protein.
Length = 750
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 486 EDCNV---PVGCAPHGRIDDINSASIRCVCDDGYVSD 587
EDC V P GC+ GR D RCVCD GY +
Sbjct: 307 EDCGVRSCPRGCSQRGRCKDG-----RCVCDPGYTGE 338
>X56160-1|CAA39628.1| 2199|Homo sapiens tenascin protein.
Length = 2199
Score = 31.1 bits (67), Expect = 3.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
D + P C HGR +N CVCDDGY + D + P
Sbjct: 466 DMSCPNDCHQHGRC--VNGM---CVCDDGYTGEDCRDRQCP 501
>U89337-3|AAB47488.1| 4289|Homo sapiens tenascin X protein.
Length = 4289
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 486 EDCNV---PVGCAPHGRIDDINSASIRCVCDDGYVSD 587
EDC V P GC+ GR D RCVCD GY +
Sbjct: 304 EDCGVRSCPRGCSQRGRCKDG-----RCVCDPGYTGE 335
>M55618-1|AAA88083.1| 2203|Homo sapiens hexabrachion protein.
Length = 2203
Score = 31.1 bits (67), Expect = 3.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
D + P C HGR +N CVCDDGY + D + P
Sbjct: 467 DMSCPNDCHQHGRC--VNGM---CVCDDGYTGEDCRDRQCP 502
>M24630-1|AAA52703.1| 1625|Homo sapiens hexabrachion protein.
Length = 1625
Score = 31.1 bits (67), Expect = 3.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
D + P C HGR +N CVCDDGY + D + P
Sbjct: 37 DMSCPNDCHQHGRC--VNGM---CVCDDGYTGEDCRDRQCP 72
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AL772248-1|CAI18078.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 486 EDCNV---PVGCAPHGRIDDINSASIRCVCDDGYVSD 587
EDC V P GC+ GR D RCVCD GY +
Sbjct: 304 EDCGVRSCPRGCSQRGRCKDG-----RCVCDPGYTGE 335
>AL662884-1|CAI18332.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 486 EDCNV---PVGCAPHGRIDDINSASIRCVCDDGYVSD 587
EDC V P GC+ GR D RCVCD GY +
Sbjct: 304 EDCGVRSCPRGCSQRGRCKDG-----RCVCDPGYTGE 335
>AL662849-16|CAI17471.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 486 EDCNV---PVGCAPHGRIDDINSASIRCVCDDGYVSD 587
EDC V P GC+ GR D RCVCD GY +
Sbjct: 304 EDCGVRSCPRGCSQRGRCKDG-----RCVCDPGYTGE 335
>AL662828-1|CAI17414.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 486 EDCNV---PVGCAPHGRIDDINSASIRCVCDDGYVSD 587
EDC V P GC+ GR D RCVCD GY +
Sbjct: 304 EDCGVRSCPRGCSQRGRCKDG-----RCVCDPGYTGE 335
>AL645922-1|CAI41718.1| 4222|Homo sapiens tenascin XB protein.
Length = 4222
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 486 EDCNV---PVGCAPHGRIDDINSASIRCVCDDGYVSD 587
EDC V P GC+ GR D RCVCD GY +
Sbjct: 304 EDCGVRSCPRGCSQRGRCKDG-----RCVCDPGYTGE 335
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AL445650-3|CAH70620.1| 1546|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 1546
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AL358858-1|CAH71587.1| 1546|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 1546
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AL162425-1|CAI15110.1| 2201|Homo sapiens tenascin C (hexabrachion)
protein.
Length = 2201
Score = 31.1 bits (67), Expect = 3.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
D + P C HGR +N CVCDDGY + D + P
Sbjct: 467 DMSCPNDCHQHGRC--VNGM---CVCDDGYTGEDCRDRQCP 502
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AL049547-2|CAB89296.1| 4288|Homo sapiens dJ34F7.1.1 (tenascin XB
(isoform 1)) protein.
Length = 4288
Score = 31.1 bits (67), Expect = 3.7
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 486 EDCNV---PVGCAPHGRIDDINSASIRCVCDDGYVSD 587
EDC V P GC+ GR D RCVCD GY +
Sbjct: 303 EDCGVRSCPRGCSQRGRCKDG-----RCVCDPGYTGE 334
>AF091889-1|AAF75819.1| 1546|Homo sapiens Usher syndrome type IIa
protein protein.
Length = 1546
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AF055580-1|AAC23748.2| 1546|Homo sapiens Usher syndrome type IIa
protein protein.
Length = 1546
Score = 31.1 bits (67), Expect = 3.7
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 3/141 (2%)
Frame = +3
Query: 210 CSTHSDCNLCREGLANCQLFDEDTIVKMRGDDGQEQEKLIRAGEAYCLALDRERARSCNP 389
C H NL + +CQ+ + D++ + G + CL + + R CN
Sbjct: 882 CEPHR-YNLTIDNFQHCQMCECDSLGTLPGT-------ICDPISGQCLCVPNRQGRRCNQ 933
Query: 390 -NTGVWLLAETETGFALLCSCLRPGLVTQLNMYEDCNVPVG-CAPHGRIDDINSASIRC- 560
G ++ TG L CSC G V + CN G C D + A RC
Sbjct: 934 CQPGFYISPGNATG-CLPCSCHTTGAVNHI-----CNSLTGQCV----CQDASIAGQRCD 983
Query: 561 VCDDGYVSDYNADTETPYCRP 623
C D Y + D +T C+P
Sbjct: 984 QCKDHY---FGFDPQTGRCQP 1001
>AB210038-1|BAE06120.1| 2233|Homo sapiens TNC variant protein
protein.
Length = 2233
Score = 31.1 bits (67), Expect = 3.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 489 DCNVPVGCAPHGRIDDINSASIRCVCDDGYVSDYNADTETP 611
D + P C HGR +N CVCDDGY + D + P
Sbjct: 499 DMSCPNDCHQHGRC--VNGM---CVCDDGYTGEDCRDRQCP 534
>Z37976-1|CAA86030.1| 1821|Homo sapiens LTBP-2 precursor protein.
Length = 1821
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +3
Query: 384 NPNTGVWLLAETETGFALLCSCLRPGLVTQLNM----YEDCNVPVGCAPHGRIDDINSAS 551
+P G W + + + C +PG N ++C C HG D+ + S
Sbjct: 1268 DPVCGTWKCENSPGSYRCVLGC-QPGFHMAPNGDCIDIDECANDTMCGSHGFCDNTDG-S 1325
Query: 552 IRCVCDDGY 578
RC+CD G+
Sbjct: 1326 FRCLCDQGF 1334
>S82451-1|AAB37459.1| 1821|Homo sapiens latent transforming growth
factor-beta-binding protein-2 protein.
Length = 1821
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +3
Query: 384 NPNTGVWLLAETETGFALLCSCLRPGLVTQLNM----YEDCNVPVGCAPHGRIDDINSAS 551
+P G W + + + C +PG N ++C C HG D+ + S
Sbjct: 1268 DPVCGTWKCENSPGSYRCVLGC-QPGFHMAPNGDCIDIDECANDTMCGSHGFCDNTDG-S 1325
Query: 552 IRCVCDDGY 578
RC+CD G+
Sbjct: 1326 FRCLCDQGF 1334
>BC078659-1|AAH78659.1| 1821|Homo sapiens latent transforming growth
factor beta binding protein 2 protein.
Length = 1821
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +3
Query: 384 NPNTGVWLLAETETGFALLCSCLRPGLVTQLNM----YEDCNVPVGCAPHGRIDDINSAS 551
+P G W + + + C +PG N ++C C HG D+ + S
Sbjct: 1268 DPVCGTWKCENSPGSYRCVLGC-QPGFHMAPNGDCIDIDECANDTMCGSHGFCDNTDG-S 1325
Query: 552 IRCVCDDGY 578
RC+CD G+
Sbjct: 1326 FRCLCDQGF 1334
>AB209865-1|BAD93102.1| 1700|Homo sapiens latent transforming growth
factor beta binding protein 2 variant protein.
Length = 1700
Score = 30.7 bits (66), Expect = 4.9
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +3
Query: 384 NPNTGVWLLAETETGFALLCSCLRPGLVTQLNM----YEDCNVPVGCAPHGRIDDINSAS 551
+P G W + + + C +PG N ++C C HG D+ + S
Sbjct: 1147 DPVCGTWKCENSPGSYRCVLGC-QPGFHMAPNGDCIDIDECANDTMCGSHGFCDNTDG-S 1204
Query: 552 IRCVCDDGY 578
RC+CD G+
Sbjct: 1205 FRCLCDQGF 1213
>AL138836-3|CAC22313.2| 602|Homo sapiens multiple EGF-like-domains
9 protein.
Length = 602
Score = 29.9 bits (64), Expect = 8.6
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +3
Query: 348 CLALDRERARSCNPNTGVWLLAETETGF-ALLCSCLRPGLVTQLNMYEDCNVPVGCAPHG 524
C + CN TG E G+ L C + G LN P C+PHG
Sbjct: 206 CSVVGSLNVNRCNQTTGQ---CECRPGYQGLHCETCKEGFY--LNYTSGLCQPCDCSPHG 260
Query: 525 RIDDINSASIRCVCDDGYV 581
+ ++S +C C G +
Sbjct: 261 ALSIPCNSSGKCQCKVGVI 279
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,939,370
Number of Sequences: 237096
Number of extensions: 1964850
Number of successful extensions: 5231
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 4511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5221
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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