Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h21
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    30   0.38 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    29   0.50 
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    29   0.66 
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   2.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   6.1  

>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 22/82 (26%), Positives = 41/82 (50%)
 Frame = +1

Query: 235 MQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKR 414
           ++ HQS++ +   + KLT+S L L   +L      KQK +   K E++    K    +  
Sbjct: 281 LKSHQSSSSVQNSSRKLTSSQLTLRQSSLFDRVRKKQKAMEAKKAEEF----KNNLVVHT 336

Query: 415 LGKEPISNLQGHDYAQLQIAIY 480
           L KE +S ++  D   +Q++ +
Sbjct: 337 LAKEKVSFVRIIDLIFVQLSTW 358


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 18/83 (21%), Positives = 36/83 (43%)
 Frame = +1

Query: 148 KMESHPLNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQH 327
           +++ HP N   ++ R A   +    YD      ++  E    +     ST   E      
Sbjct: 326 QLDEHPHNFTQRELREARRIIPQFSYDPPGASGRNRRER-TSSTPSEQSTSVNETANSLS 384

Query: 328 SYHLKQKDLIKYKKEQYVRVKKA 396
           + HL + ++   ++E+YVR ++A
Sbjct: 385 NLHLSRGEIAHLRQEEYVREQQA 407


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 307 EAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKRLGK 423
           E +++    H KQK   +YKK ++   KKA   IK+L K
Sbjct: 45  EQLSMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEK 83


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 157 IPFWCHPFTFNNWNQKELPSL 95
           +P W   F   NW+   LPSL
Sbjct: 452 LPIWLTEFACTNWDDSNLPSL 472


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 401 SMAFLT-LTYCSFLYFIKSFC 342
           S+AF+  L YCSF +FI   C
Sbjct: 432 SLAFIVCLKYCSFYFFIGPIC 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,634
Number of Sequences: 5004
Number of extensions: 40127
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)