Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1h21
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0669 + 12779583-12779675,12779942-12780124,12780266-127804... 30 2.1
11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158 29 4.8
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 29 4.8
06_03_0245 + 18654103-18654428,18654507-18654677,18654760-18654874 29 4.8
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 28 6.4
11_01_0222 + 1740828-1740830,1741109-1741218,1741304-1741487,174... 28 8.5
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085... 28 8.5
06_01_0371 - 2678332-2678541,2678650-2678804,2678895-2678940,267... 28 8.5
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 28 8.5
>02_02_0669 +
12779583-12779675,12779942-12780124,12780266-12780481,
12780590-12780952,12781453-12781612,12781724-12781827
Length = 372
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = +1
Query: 274 AMKLTTSTLALEAI----TLQHSYHLKQKDLIKYKKEQYVRVKKAMDTIKRLGKEPISNL 441
A KLT ++ A+EA+ TL +H+K + +I+ ++++YVR +A+ I R K P +
Sbjct: 26 AHKLTAAS-AIEAMDVLDTLVVRFHIKGEFVIEVREKKYVRSVEALSYIAR-DKVPFGEI 83
Query: 442 QGH 450
H
Sbjct: 84 LAH 86
>11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158
Length = 425
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -1
Query: 307 LKPK*KSLTSLHQQEVRQHFDDIALLHHICDSSSELQHDDVA 182
L+ K K + QQ+ H D+A LH +++ +HD+V+
Sbjct: 263 LQQKLKKARTEEQQQAAFHVSDVATLHAHAAAAAAARHDEVS 304
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 190 RRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYK 366
RR EAH K YDEA+ + EL + S LE + + +K++ + K K
Sbjct: 291 RRGEAHEKLEHYDEAIADMKKIIELDPSNEQAKRSLFRLEPLAAEKREKMKEEMIGKLK 349
>06_03_0245 + 18654103-18654428,18654507-18654677,18654760-18654874
Length = 203
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -1
Query: 247 DDIALLHHICDSSSELQHDDVADVPSL--VDEIPFWCHPFTFNNWNQKELPSLAFI*IYM 74
DDI L+ + L D+ D+ SL VD C+ W QK P +AF+ +
Sbjct: 70 DDIKLVPAAEKDIAWLTFKDLFDLYSLRAVDTSLLKCYSLLSWQWCQKNAPEVAFLDPQV 129
Query: 73 KEINNVNDNKSSFYFFLRNSIFT 5
+ N+ +++ ++ +++++
Sbjct: 130 VTVTNLQNDRQGMVNYIYDTLWS 152
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 166 LNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALE 309
+N Q+ R A + + +A + HQ AA LL + KLT L L+
Sbjct: 334 INEGAQERYRVHAQAEASQ-QQANEAHQQAAALLEEVQKLTVENLQLK 380
>11_01_0222 +
1740828-1740830,1741109-1741218,1741304-1741487,
1742159-1742344,1742631-1742849,1742958-1743171,
1743549-1743601,1743839-1743874
Length = 334
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/93 (21%), Positives = 37/93 (39%)
Frame = +1
Query: 226 DEAMQCHQSAAELLVDAMKLTTSTLALEAITLQHSYHLKQKDLIKYKKEQYVRVKKAMDT 405
D+ C EL ++ KLT + H K KD+ + +EQ + +D
Sbjct: 52 DDYFHCEHCKGELRPESEKLTLDEIVCGGGNAIKHTHDKLKDMQQRMEEQLKPLIAVLDR 111
Query: 406 IKRLGKEPISNLQGHDYAQLQIAIYRAINETDS 504
+K L +LQ + A + + A+ + +
Sbjct: 112 VKDLPFPSFMSLQDWERATIGASANGAVGSSQN 144
>09_02_0524 -
10207711-10208154,10208237-10208338,10208439-10208531,
10208612-10208683,10208730-10208798,10208928-10209175,
10209256-10209370
Length = 380
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +1
Query: 166 LNLAHQQHRRAEAHLKNHRYDEAMQCHQSAAELLVDAMKLTTSTLALE 309
+N Q+ R A + + +A + HQ AA LL + KLT L L+
Sbjct: 277 INEGAQERYRVNAQAEAAQ-QQANEAHQQAAALLEEVQKLTVENLQLK 323
>06_01_0371 -
2678332-2678541,2678650-2678804,2678895-2678940,
2679203-2679424,2679546-2679586,2680104-2680233,
2680316-2680384,2680612-2680665,2680801-2680959,
2681455-2681541,2681628-2681690,2681801-2681840,
2681939-2681985,2682471-2682773
Length = 541
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 300 GFRGYYAATQLSLKTKRFNKVQKR 371
G+RG+YA + L K N + KR
Sbjct: 182 GYRGFYACNTIDLSPKSVNDIHKR 205
>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 283 TSLHQQE-VRQHFDDIALLHHICDSSSELQHDDV 185
TS+ E + HFDD LL H+C + D++
Sbjct: 1569 TSIGDSELIDDHFDDNFLLQHLCSEIMDFSGDNI 1602
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,339,801
Number of Sequences: 37544
Number of extensions: 215312
Number of successful extensions: 597
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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