Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h18
         (390 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058...    38   0.002
03_01_0468 - 3612079-3612197,3612679-3612850                           29   0.99 
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942...    27   7.0  
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317...    27   7.0  
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287...    26   9.2  
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87...    26   9.2  

>10_07_0172 +
           13804803-13805293,13805423-13805537,13805766-13805831,
           13805921-13806009,13806103-13806193,13806312-13806458,
           13806575-13806667,13806745-13806846,13806957-13807541,
           13808523-13808813,13808866-13808937
          Length = 713

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -3

Query: 247 SQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTLALRTSTAKHFHDTSK 71
           +QPP    R ++ EDV++TD +  V  D T  +  EL   L  L      A H H   K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663


>03_01_0468 - 3612079-3612197,3612679-3612850
          Length = 96

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 247 SQPPSFTFRFKKSEDVSVTDGSFHVSDDLTAGLPNELDLHLSTL 116
           ++PP      ++ EDV++++ +  V  D T  +  ELD HL  L
Sbjct: 10  AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHL 53


>03_05_0052 -
           20293197-20293310,20293938-20294024,20294133-20294270,
           20295009-20295128,20295236-20295343,20296053-20296133,
           20296216-20296456,20297010-20297305
          Length = 394

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 2   SFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 181
           S   RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


>01_06_0020 +
           25630728-25631023,25631308-25631548,25631629-25631709,
           25632109-25632216,25632329-25632448,25632806-25632943,
           25633064-25633150,25633802-25633915
          Length = 394

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 2   SFGARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 181
           S   RVLI     L    D PN     +  +GR+G  G+   V + F+ +   +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376


>02_01_0395 +
           2869748-2870045,2870450-2870571,2871700-2871777,
           2871886-2872470,2872917-2873657,2873794-2873868
          Length = 632

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 178 HVSDDLTAGLPNELDLHLSTLAL 110
           HV DD+ A  P+++D H   L L
Sbjct: 108 HVQDDVAASSPDQMDHHTKDLLL 130


>02_01_0119 -
           876317-876610,876937-877099,877222-877302,877508-877570,
           878246-878355
          Length = 236

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 23  IALSSIL----QAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 190
           + LSS++    QAK+DK N+L+   ++L     + +  +   E + ET +  ++  K  +
Sbjct: 87  LELSSVINPDKQAKLDKANILSDAARLLAELRGEAEKLKESNEKLRETIKD-LKVEKNEL 145

Query: 191 RD 196
           RD
Sbjct: 146 RD 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,794,930
Number of Sequences: 37544
Number of extensions: 173400
Number of successful extensions: 420
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)