Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h14
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334...    41   8e-04
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603...    34   0.091
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    34   0.091
06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722...    33   0.28 
12_01_0794 + 7285100-7285369,7285931-7286338                           32   0.48 
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727...    32   0.48 
11_03_0142 + 10675764-10675991,10676533-10676943                       31   0.64 
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549...    29   2.6  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    29   2.6  
09_04_0379 - 17094540-17094868,17095354-17095717                       29   4.5  
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615...    29   4.5  
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    29   4.5  

>01_06_1796 -
           39932487-39932633,39933150-39933201,39933370-39933495,
           39933645-39933743,39934039-39934258,39934599-39934764,
           39935108-39935161,39935527-39935657,39935747-39935818,
           39936524-39936602,39936705-39936783,39936868-39936902,
           39936986-39937111
          Length = 461

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 474 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 566
           LP  WEE  D+  GQ Y++N +T    W PP
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPP 265



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +3

Query: 474 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHP------RAVPTESAAQLREERL 623
           LPPGW E  D   G  YF+N  T    W  PG P      +A P+ S  +  EE L
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLNTMQHQAPPSSSLPENWEEAL 243


>06_03_1360 +
           29558789-29559020,29559203-29559378,29560285-29560346,
           29560426-29561212,29561516-29562244
          Length = 661

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 327 PVKGHRGCPNKSNIYHECSTFCIKR 401
           P K    C N SN YHECS +C+++
Sbjct: 9   PGKSRPDCVNSSNPYHECSDYCLRQ 33



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 339 HRGCPNKSNIYHECSTFCIKRWKQGKLVPT 428
           H  C N SN YH CS FC +R    K  P+
Sbjct: 48  HPHCINASNPYHACSNFCFRRIIHAKPSPS 77


>01_03_0256 +
           14288885-14288936,14289362-14291335,14291648-14291673,
           14291855-14292025,14292560-14292647,14292711-14292802,
           14292920-14293384,14293860-14294633,14294890-14295087,
           14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 474 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 566
           LPPGWEE FD   G+ ++ + +T   +W  P
Sbjct: 526 LPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556


>06_03_1362 +
           29571324-29571564,29571746-29571921,29571972-29572251,
           29572949-29573085,29573174-29573401
          Length = 353

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 339 HRGCPNKSNIYHECSTFCIKRWKQGK 416
           H  C N SN YH CS +C KR    K
Sbjct: 54  HPDCINASNPYHVCSEYCFKRIADAK 79



 Score = 31.9 bits (69), Expect = 0.48
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 333 KGHRGCPNKSNIYHECSTFCIKRWKQGK 416
           K    C N SN +HECS +C+++  + K
Sbjct: 11  KSRPECINSSNPFHECSDYCLRKIAEAK 38


>12_01_0794 + 7285100-7285369,7285931-7286338
          Length = 225

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 405 KQGKLVPTETYLEHKEKVLELW-PLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 566
           K+ K    E  + H    L+L  PLP  WE+  D   G+ Y+ N  T   SWI P
Sbjct: 55  KKRKHFTWEEPVSHANLELQLNDPLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109


>03_03_0253 +
           15871870-15871949,15872101-15872170,15872666-15872701,
           15873576-15873630,15873859-15873941,15874019-15874850,
           15875184-15875286,15875359-15875498,15875649-15875880,
           15876203-15876338,15877208-15877302,15877381-15877504,
           15877690-15877812
          Length = 702

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 486 WEEVFDEGYGQHYFWNVHTNLVSWIPP 566
           W  ++D  Y ++YF+N+ T   +W PP
Sbjct: 326 WRVLWDPFYSRYYFYNILTQESTWYPP 352


>11_03_0142 + 10675764-10675991,10676533-10676943
          Length = 212

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 471 PLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 566
           PLP  WE+  D   G+ Y+ N  T   SW+ P
Sbjct: 64  PLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95


>06_03_1359 +
           29554078-29554375,29554470-29554655,29554768-29554923,
           29555557-29555694,29555789-29555909,29556339-29556345
          Length = 301

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 348 CPNKSNIYHECSTFCIKRWKQ 410
           CPN  N +HEC+  C  + K+
Sbjct: 177 CPNAGNPFHECTEHCAAKMKE 197


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 474 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHP 575
           LP  W  + D   G  Y+WN  TN+  +  P  P
Sbjct: 19  LPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52


>09_04_0379 - 17094540-17094868,17095354-17095717
          Length = 230

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 258 IAEDYDSKPNENGKDEPWEGFVDPVKGHRGCPNKSNIYHECSTFCIKRWKQGK 416
           I   +DS+      +E  +G V P++G      ++  Y E S  C +RWK+ +
Sbjct: 124 ILTKHDSEDVSREAEESTDGEV-PLEGSEELSAEARDYEEVSPGCSRRWKEAR 175


>07_01_0789 -
           6150257-6151046,6151167-6151390,6151816-6151991,
           6152778-6153801
          Length = 737

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +3

Query: 417 LVPTETYLEHKEKVLELWPLPPGWEEVFDE--GYGQHYFWNVHT 542
           + P ET  +H ++ ++LW +   W   FD+   Y + Y  +++T
Sbjct: 504 VAPRETSEQHHDRTVQLWNVVHEWHTQFDKFMTYQKQYVGSLYT 547


>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 306 PWEGFVDPVKGHRGCPNKSNIY 371
           P  GF DPV GH G P  SN Y
Sbjct: 828 PNAGFTDPVGGH-GAPTSSNAY 848


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,004
Number of Sequences: 37544
Number of extensions: 359349
Number of successful extensions: 1016
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)