Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h12
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   1.6  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    28   1.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   3.8  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.0  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    26   5.0  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    26   5.0  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   6.6  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   8.7  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   8.7  
SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   8.7  
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.7  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    25   8.7  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 244 STSIGNFRAAKGLTRRWAMRSVTPKHTFCCWMSCAKC*TTSKCKPAG 104
           S ++G+     G T  W M  ++PK T+  +   A   T S   P G
Sbjct: 426 SQNVGDIEIGLGNTNSWKMCGISPKSTYAIYFEVA---TQSASAPQG 469


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 201 RVSPFAARKFPIDVDTIK-KFPHLQKFLNRLYKNVSFFNVVHEIERVR 341
           R  P   + F  ++ TI+  +PH+ ++L RLY     F+   + + ++
Sbjct: 239 RFDPVYVQHFKCNIGTIRHNYPHINQWLKRLYWKHPAFHETTDFKHIK 286


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 225 KFPIDVDTIKKFPHLQKFLNRLYKNVSFFNVVHEIER 335
           K+ I  D IKKF   +K    L  N   F+ +H I +
Sbjct: 410 KYIIPTDYIKKFLTAKKLFTDLPSNNELFSFIHNIPK 446


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 475 AHGSWMATLKSSRPLHDRCRASKL 546
           A  +W   L  SRPL DR  A+KL
Sbjct: 306 AIANWTMPLAHSRPLQDRFNAAKL 329


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 3/22 (13%)
 Frame = +3

Query: 276 FLNRLYKNVSFFNV---VHEIE 332
           FL+++Y+NVS FNV   +H+IE
Sbjct: 37  FLSKIYENVSNFNVPRKLHDIE 58


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 516 PARSLQ-SFKTSGYCFEGVVYSIATA 590
           P + L+ +F+  G CF+G + +IATA
Sbjct: 83  PVKELELNFEIKGICFDGKLLAIATA 108


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 297 NVSFFNVVHEIERVRQS 347
           N +F N VHE+ER+R+S
Sbjct: 561 NRNFANYVHEVERLRES 577


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -2

Query: 579 WNKRRPQNNTRKF*SSATIVQGTRRFQSCHPRSVGRRTKTPKGRVRLERTVQRQFWTIDG 400
           W++ +PQ   R+   S+TI      ++S         +KT  G + LE    +Q      
Sbjct: 10  WSQYKPQETQRRLSRSSTITPSVSEYRSGF-------SKTAFGNIELEEIPDKQ------ 56

Query: 399 GEISKPTS--KNSSFNRRLD 346
           G I++ TS  +++S+ + LD
Sbjct: 57  GNITRATSNLESNSYPKALD 76


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 356 GGWTLSDPFYF--MHDVEKRNVFVES-VKEFLQVWKFFDGVDV 237
           G +  +D F F    +V  RNV     VKE +++++ + G+DV
Sbjct: 572 GSYQSNDVFGFPLQLNVRSRNVLTNDLVKEIVELYRVYAGIDV 614


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 211 PLPPGNSQSTSTPSKN 258
           PLPP N QS S+ S+N
Sbjct: 250 PLPPSNVQSNSSSSEN 265


>SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 99

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 439 QADTPFWGFCTAAHGSWMATLKSSR-PLHDRCRASKL 546
           +A    W  C AA+G WM      R  L+   R SKL
Sbjct: 49  EAGFAVWSRCEAANGEWMEADNEDRCRLYQIYRESKL 85


>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 490 STIRGPPYKNPKRACPLGTNRTKAI 416
           +TIR PPYK  K +C    N    +
Sbjct: 127 NTIRSPPYKVKKESCHTEINNVSNV 151


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 427 YGSFQADTPFWGFCTAAHGSWMATLKSSRPLHDRC 531
           +GS+   T  W      HG  + TL  + P+ + C
Sbjct: 75  HGSYLVGTNLWIIMDYCHGGSVRTLMEAGPISEPC 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,903
Number of Sequences: 5004
Number of extensions: 72897
Number of successful extensions: 256
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)