Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h10
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   6.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   6.0  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   6.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.0  

>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 302 ALGLQPQSKVKIIAHKTLEKFKRDAYTRFKGVKAIKNELKTYNLTLQQYNEALNQC 135
           AL LQ   +  ++  K L   ++ +    KG+  I   + TY  T+   NE +N C
Sbjct: 70  ALELQKLKQENVLLRKDLNNLEQISDCYAKGMDDIMKHVATYTATM---NERMNAC 122


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 6   IFFNFFGFRIKINSIYMPLVYFHTLFNIVMPIIC 107
           IF N FG  ++ + I   L+   +  N+ +PIIC
Sbjct: 343 IFVNIFGGIVRCDVIAKGLISVVSALNLNIPIIC 376


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 7   YSLISLVLELKLTLYICLLFIFTPSLIS 90
           YSL+S VL +  T Y  ++F++  S ++
Sbjct: 477 YSLLSRVLVISSTAYFLIMFVYHSSWVT 504


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 320 KMIFMNALGLQPQSKVKIIAHKTLEKFKRDAYT 222
           K  +++ALG     K+ II+HK L  F  D ++
Sbjct: 303 KKKYIDALGSSFDEKIMIISHKYLAPFFTDQFS 335


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -3

Query: 350  MNTRGCVNNNKMIFMNALGLQPQSKVKIIAHKTLEKFKRDAYTR--FKGVKAIK 195
            M T+  ++++ M    ALG+   S  ++ AH   E  ++DA+    FK + ++K
Sbjct: 1269 MITKKSMSSDMMTQFRALGISQSSTKQVSAHYLREFERQDAFRNGVFKRLTSLK 1322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,135
Number of Sequences: 5004
Number of extensions: 50508
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)