Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h10
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347...    33   0.22 
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766...    30   2.1  
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    29   3.6  
07_02_0030 + 12002825-12003510,12003654-12003708,12003911-120039...    29   3.6  
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252...    29   4.8  
01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497...    28   8.3  

>08_02_1176 +
           24931728-24931877,24933175-24933275,24934410-24934788,
           24935509-24936354,24936555-24936642,24936947-24937039,
           24937221-24937318,24937364-24937470,24938266-24938353,
           24938748-24939005
          Length = 735

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 145 SASLYCCNVRLYVFSSFLIAFTPLKRVYASRLN-FSSVLCAIIFT 276
           S +LY  NV +YVFSS ++ F   K   +   N F +VL  +I T
Sbjct: 568 SRTLYVSNVGIYVFSSHMVHFGATKDALSRHFNKFGAVLKVVIVT 612


>12_02_0381 + 18376045-18376114,18376270-18376420,18376524-18376681,
            18378680-18378945,18379025-18379243,18379309-18379417,
            18379488-18379603,18379935-18380033,18381447-18381556,
            18382928-18383006,18383127-18383273,18383363-18383443,
            18383529-18383648,18383902-18384024,18384276-18384353,
            18384459-18384547,18384653-18384761,18385018-18385086,
            18385200-18385310,18385657-18385712,18385808-18385985,
            18386065-18386166,18386243-18386314,18386489-18386554,
            18386674-18386739,18386853-18386936,18387080-18387196,
            18388077-18388163,18389321-18389341
          Length = 1050

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = -3

Query: 299  LGLQPQSKVKIIAHKTLEKFKRDAYTRFKGVKAIKNELKTYNLTLQ-QYNEALNQCALND 123
            LGL   SK+++ +H    +  +    R++GV+ + + L  YN T    Y E L+   L +
Sbjct: 804  LGLDDPSKIRLTSHNCYSQQPKPQPIRYRGVEHLLDMLVHYNQTSDILYYEVLD-IPLPE 862

Query: 122  SRWRDTNN--WHHDIKEGVKINKRHIYRVNFNSKTKEI 15
             +   T    +HH  K+ V I   H  R+  NS   ++
Sbjct: 863  LQCLKTLKVAFHHATKDEVVI---HSIRLPKNSTISDV 897


>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -3

Query: 302 ALGLQPQSKVKIIAHKTLEKFKRDAYTRFKGVKA----IKNELKTYNLTLQQYNEALNQC 135
           A G  P   +  +  K L K   D YT+ KGV+      +NEL +    L+   E + + 
Sbjct: 60  ARGGPPAGVMNTLLSK-LSKILEDKYTKLKGVRRQIAFFRNELSSMKAALEML-ETVEEL 117

Query: 134 ALNDSRWRDT 105
                 WRDT
Sbjct: 118 DPLQKEWRDT 127


>07_02_0030 +
           12002825-12003510,12003654-12003708,12003911-12003996,
           12004093-12004433,12004512-12004699,12004776-12004962,
           12005035-12005139,12005202-12005239,12005369-12005653
          Length = 656

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 206 KAIKNELKTYNLTLQQYNEALNQCALNDSRWR--DTNNWHHDIKE 78
           KA+    +  N   Q+  E  N C ++ S W+   T N  H+IKE
Sbjct: 442 KALNQATRIVNNPSQERGEDRNSCKVSSSSWKLEATRNQLHEIKE 486


>03_05_0650 -
           26423829-26424179,26424379-26424612,26424961-26425236,
           26425372-26425648,26425751-26425764,26425843-26425989,
           26426306-26426366,26426570-26426604,26426688-26426882,
           26428230-26428439,26428865-26428940,26429519-26429799
          Length = 718

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 9   FFNFFGFRIKINSIYMPLVYFHTLFNIVM-PIICVAPSAIV*SALIERFVVLL 164
           F N +  +     +Y P+ ++ T+F+IV+  IIC+    +  S +   F V L
Sbjct: 525 FLNVYCTKYDTGGLYWPIAHYTTIFSIVLTQIICLGVFGLKESPVAAGFTVPL 577


>01_05_0668 -
           24147412-24147618,24148019-24148286,24149506-24149728,
           24149822-24149996
          Length = 290

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 46  LYICLLFIFTP-SLIS*CQLFVSRHRLSFKAH*LSASLYCCNVRLYVFSSFLIAFTPLKR 222
           LY   LFIF P SL+S   + + R  ++  A  +SA+    N+R ++ +S    F  +  
Sbjct: 210 LYGYSLFIFIPASLLSIVPIEIFRWVIAGVAGFMSATFVAMNLRAHIVNSGERWFLIVAG 269

Query: 223 VYASRLNFSSVLCAIIFTL 279
           ++  +L  + +L    FT+
Sbjct: 270 IFLLQLGLAVLLKLYFFTI 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,125
Number of Sequences: 37544
Number of extensions: 253729
Number of successful extensions: 476
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)