Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1h08
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 59 7e-10
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 33 0.029
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 31 0.15
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 31 0.15
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 29 0.47
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 29 0.62
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.9
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 3.3
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 27 3.3
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 3.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.3
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 26 4.4
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 7.6
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 7.6
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 7.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 7.6
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 58.8 bits (136), Expect = 7e-10
Identities = 28/87 (32%), Positives = 46/87 (52%)
Frame = +2
Query: 86 RDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAAD 265
+D P++ ++ ++ F E R++++ PD F +L L W L + E++ Y + A
Sbjct: 11 KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKAR 70
Query: 266 QDKERYVKECAEYKRTNAYKEFTKQQS 346
QDKERY +E EY A E T + S
Sbjct: 71 QDKERYERERKEYDTKLANGEKTGKAS 97
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 33.5 bits (73), Expect = 0.029
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 3/180 (1%)
Frame = +2
Query: 134 LNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEYKRT 313
L ++ +QLR Q+ + +EL Q+ E S+L + ++Q L+ + +E+ +K Y
Sbjct: 171 LVKKCNQLRLQKL-INSSELA-QIDLELSKLYSR-RRQVLERLSKIEEQNLK----YTSK 223
Query: 314 NAYKEFTKQQSDLQDGSLSKKLRQVP-QVDASVSGGTQPGESTMYSASTTNMSSRQTTPP 490
A E SD QD S +P Q++A +G + T N+S+R +P
Sbjct: 224 LASVEKLMLDSDAQDLYSSYSHDLIPSQIEAGKNGANPDVFDDTHDKYTDNLSARAISPR 283
Query: 491 KPRPCINPTSGEMEIPIFTDQFLQHNKLRESELRQLRKANSDYEQQNAI--LHRHAEEVS 664
PRP T+ E + +D F Q++ ++ N +Y N + H+E ++
Sbjct: 284 APRP---STASE----VVSDYFEQNSAFSKAPENTESSVNQNYIVGNLVKQFQAHSEYIT 336
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 31.1 bits (67), Expect = 0.15
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = +2
Query: 242 QQYLDAADQDKERYVKECAEYKR--TNAYKEFTKQQSDLQ------DGSLSKKLRQVPQV 397
Q YL + R E + +R T+A + KQ+S+L ++S +R + Q+
Sbjct: 130 QNYLTEMKEALGRIKNELSTNERLDTSAREALVKQESELTVKIAQFTAAISNGIRSIQQL 189
Query: 398 D---ASVSGGTQPGESTMYSASTTNMSSRQTTP 487
AS + G G ST +AST S +TP
Sbjct: 190 QNRQASSANGNNTGTSTPVNASTDTRKSTASTP 222
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 113 LTGYVRFLNERRDQLRAQQPDLG 181
LTGY + N+RRD+L A+ P LG
Sbjct: 477 LTGYYIYENKRRDRLLAEDPSLG 499
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 29.5 bits (63), Expect = 0.47
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 9/169 (5%)
Frame = +2
Query: 137 NERRDQLRAQQ-PDLGFAELTRQLASEWS--RLPAEEKQQYLDAADQDKERYVKECAEYK 307
N R D+ +A ++ + + + +SE + A +K++ + + Y KE
Sbjct: 499 NVRNDESKANSLSEISYNQQSECRSSELNVNEDSANQKEESALGTSDNSDMYEKENTPIH 558
Query: 308 RTNAYKEFTKQQSDLQDGSLSK-----KLRQVPQVDASVSGGTQPGESTMYSASTTNMSS 472
+ + +K + +K KL++ + +S G Q +S S S
Sbjct: 559 HNESLNQLSKDLGSISLSEETKQEKPSKLKETVE-SKRLSTGVQK-QSPAASKEIPVTSG 616
Query: 473 RQTTPPKPRPCINPTSGEMEIPIFTDQFLQHNKLRESE-LRQLRKANSD 616
QTT PKP P + +P + + + SE L Q+ K+NSD
Sbjct: 617 SQTTAPKPSPW--KSLPPKHLPSLDETISREMSIASSEALPQVEKSNSD 663
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 29.1 bits (62), Expect = 0.62
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 574 QFVMLQKLVCEDWYFHFTRCRINTWSWF--WWGSLT*RHVCCRSTIHCTFSW 425
+ + LQ + E+W TRC WS F W S V +T+ C F W
Sbjct: 881 EVLFLQISLTENWLIFITRCSGPFWSSFPSWQLSGAVLVVDILATLFCIFGW 932
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 404 SVSGGTQPGESTMYSASTTNMSSRQTTPPKPRPCINPTSGEMEIPIFTDQFLQHNKLRES 583
S+ G + + T+YS ++ S QT P +PTS +EI F+ H++
Sbjct: 272 SIKGLSSSEQGTVYSLKASHDPSNQTQLSSPNKSSSPTS--IEISDFSKNNENHDQSENK 329
Query: 584 E 586
E
Sbjct: 330 E 330
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 3.3
Identities = 23/121 (19%), Positives = 49/121 (40%)
Frame = +2
Query: 131 FLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEYKR 310
F + ++ +L+A+ L L + L W+ L EEK+ Y + +E+ +E +R
Sbjct: 205 FSSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREK-AREAR--RR 261
Query: 311 TNAYKEFTKQQSDLQDGSLSKKLRQVPQVDASVSGGTQPGESTMYSASTTNMSSRQTTPP 490
+A ++ ++ K Q D + + G+ + + ++ PP
Sbjct: 262 RSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPILPP 321
Query: 491 K 493
K
Sbjct: 322 K 322
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 197 RQLASEWSRLPAEEKQQYLDAADQDKERYVK----ECAEYKRTNAYKEFTKQQSDLQDGS 364
R+ EW + E+K ++ A ++DK + K + AE+K+ + +++ +D +
Sbjct: 115 RREMGEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKA 174
Query: 365 LSKKLRQ 385
KK R+
Sbjct: 175 EWKKARE 181
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 209 SEWSRLPAEEKQQYLDAADQDKERYVKECAEYKR-TNAYKEFTKQQSD 349
+EW + E+K ++ A ++DK + K E K N+ E+ K +
Sbjct: 152 AEWKKAREEDKAEWKKAREEDKAEWKKAREEDKEWRNSMDEWRKSMDE 199
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 3.3
Identities = 28/110 (25%), Positives = 48/110 (43%)
Frame = +2
Query: 305 KRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVDASVSGGTQPGESTMYSASTTNMSSRQTT 484
+++N KE K + + GSLS+ R+ + +AS E Y+AS N S +
Sbjct: 141 EKSNDVKEVNKAMHE-KWGSLSEDDRKTYEEEASKLREAYEEEMAAYNASKENASVADSR 199
Query: 485 PPKPRPCINPTSGEMEIPIFTDQFLQHNKLRESELRQLRKANSDYEQQNA 634
P S ++ P D + ++ R L Q +A D ++Q+A
Sbjct: 200 VTAEETSTKP-SEDLSSPTKKD-LIDFSETR--PLAQASRATPDIKEQHA 245
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 209 SEWSRLPAEEKQQYLDAADQDKERYVKECAEYKRTNAYKEFTKQQSDLQ 355
SE SRL + YLDA +Q + K + + T EFTK +DL+
Sbjct: 1280 SELSRLTVLSLENYLDAFNQ--VNFKKMELDNRLTTTDAEFTKVVADLE 1326
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/64 (25%), Positives = 34/64 (53%)
Frame = +2
Query: 86 RDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAAD 265
+ +T Q ++ +R L + + +R +L A + ++ E LP E+ ++ +D AD
Sbjct: 106 QSSTKIMQDVSSLIR-LPQLSETMRNLSMELTKAGVLEEMRDEMF-LPVEDDEELMDLAD 163
Query: 266 QDKE 277
+D+E
Sbjct: 164 EDEE 167
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +2
Query: 233 EEKQQYLDAADQDKERYVKECAEY----KRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVD 400
EE ++ D Q ERY +C E+ KR +E + + S L Q+ +
Sbjct: 599 EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTE 658
Query: 401 ASV 409
A V
Sbjct: 659 AEV 661
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 7.6
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Frame = +3
Query: 297 RNTKEQMLIKSSQNNNLICKMVAYQRSYGRFLK*TL-----QFLGVPNQEKVQCIVLLQQ 461
R KE L + ++L+C + ++S+G F++ + ++ + + + +VL+Q
Sbjct: 253 REHKELALYHEKKTHSLVCNLNGERKSFGDFVENEVKSYKHEYANICESLR-RALVLIQG 311
Query: 462 TCLHVRLPHQNQDHVLILHLVKWKYQSSQTNFCNITN*ENLS*DN*ERQIQITNSRMQSY 641
+C L + + IL L++ K Q +I +L+ +R+I ++ Y
Sbjct: 312 SCTEKILRFKEK----ILDLLEMKQQEENDRISHIEYENDLTVKKLKRRISELEMAVKEY 367
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = -3
Query: 574 QFVMLQKLVCEDWYFHFTRCRINTWSWF--WWGSLT*RHVCCRSTIHCTFSW 425
+ + L+ + E+W TRC WS W S V +T+ C F W
Sbjct: 793 EVLFLEISLTENWLIFVTRCNGPFWSSIPSWQLSGAVLAVDILATMFCIFGW 844
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 317 AYKEFTKQQSDLQDGSLSK 373
AY EF Q+ L+DG+LSK
Sbjct: 1143 AYDEFCDFQTSLKDGALSK 1161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,219
Number of Sequences: 5004
Number of extensions: 54017
Number of successful extensions: 191
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -