Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h06
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   1.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   7.2  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   7.2  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   9.5  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   9.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   9.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   9.5  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   9.5  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   9.5  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 418 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAMMKAMPPTIIQATGA 239
           TTP   T TITP V  + I T M  A +T M+       +     +  A   T ++ T  
Sbjct: 108 TTPMVETTTITPMVETTTI-TPMVEAMITLMEETMTTPMEETTTILPMAAMTTPMEETTT 166

Query: 238 TLKLVSDSTV 209
           T  +V  +T+
Sbjct: 167 TTPMVETTTI 176


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 427 IAAT-TPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPK-NAMMKAMPPTII 254
           +A T TP+   +      SFS+ +T      VTS  + S++ P     N+    +PPT  
Sbjct: 30  VATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTS 89

Query: 253 QATGATL 233
             T  T+
Sbjct: 90  MNTTTTV 96


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -3

Query: 362 QHQHEDRVGDKHAVALPDGTAASEECNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MN 183
           +   ++R G+KH    P     S   NDES A  N      Y++    Q     SEL +N
Sbjct: 476 ESSEQNRGGNKHLELYPSTAEVSNVRNDESKA--NSLSEISYNQ----QSECRSSELNVN 529

Query: 182 RQSETQQSET 153
             S  Q+ E+
Sbjct: 530 EDSANQKEES 539


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 571  QGVVEQHVMGRVKDRYEPGPVGPQQLN 491
            Q VV++ V   VK+   P P  PQ LN
Sbjct: 1165 QNVVDESVTRVVKELPVPAPAAPQTLN 1191


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
 Frame = -1

Query: 418 TTPSRFTNTITPKVSFSAINTSMKIA*VTSMQLLSLMAPQHPKNAMM-------KAMPPT 260
           + P+  TN +  K   +  N S ++   TS+  LS  AP+ PK A +       K  P  
Sbjct: 86  SNPTSKTNNVRAKAR-NIRNPSQRLRPSTSLARLSNNAPRIPKEASLHENSISSKESPSV 144

Query: 259 IIQATGATLKLVSDSTVS-MSANCK 188
                 AT+   S S+++ MS+N +
Sbjct: 145 TTSKHVATITKPSTSSIARMSSNAR 169


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 446 LVHPVRDSSNYSVEIHKH-HYAQ 381
           LVH V ++  YSV + +H HY Q
Sbjct: 287 LVHLVHETLQYSVRLEQHFHYTQ 309


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 441 NKTFQQDQDTFHVIEHRFSCCGPTGPGSYLSLTLPITC 554
           N  F  DQD  +VI   FS   P+  G      +  TC
Sbjct: 191 NPLFFGDQDNGYVISQSFSLRDPSARGGLRRYAIIATC 228


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 440 HPVRDSSNYSVEIHKHHYAQGQFQ 369
           HP +DS  Y+  +H   +A  +FQ
Sbjct: 511 HPNKDSEVYTKNLHNKRFASVRFQ 534


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 362 DGTETDLGRNGVCESRRSSCCY 427
           DG    L +  +C+ ++ +CCY
Sbjct: 342 DGKTCKLTKGSLCDDQQDACCY 363


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 354  LVLMALKLTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFH 476
            +V+++L +++GVM  +    +V  I +W    F +  +T H
Sbjct: 1106 VVIISLGISIGVMFLIMSGSIVVEIIHWF---FSEHVETLH 1143


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 332 CHLRDLHAGVDGTETDLGRNGV 397
           C LRD     DG +T++G  G+
Sbjct: 683 CLLRDFEILADGDQTEVGEKGI 704


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 428 DSSNYSVEIHKHHYAQGQFQCHQHQHE 348
           D+ + ++E    +Y +G+F CH   HE
Sbjct: 286 DTCSQNLEHVGFYYREGKFYCHLDYHE 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,898
Number of Sequences: 5004
Number of extensions: 51993
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)