Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1h06
(655 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 62 3e-12
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 25 0.84
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 25 0.84
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 25 0.84
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 25 0.84
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 24 1.1
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 1.9
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 23 3.4
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 6.0
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 21 7.9
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 62.5 bits (145), Expect = 3e-12
Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 12/199 (6%)
Frame = +3
Query: 87 MGCGEFLVKYVXXXXXXXXXXXXXXXXXXXXXVHLQFADIETVLSETSFRVAPVACMIVX 266
M CG ++KY+ +HLQ + + ET + +++
Sbjct: 1 MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQI-ETGLAFPSITLIVLG 59
Query: 267 XXXXXXXXXXXXXXXRESNCMLVTYAIFMLVLMALKLTLGVMVFV------NLDGVVAAI 428
RES+CM +T+A F+L ++ +++ + V F+ N +
Sbjct: 60 SIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKY 119
Query: 429 PNWMNKTF--QQDQDTFHVIEHRFSCCGPTGPGSYLSLTLPITCCST---TPCTVINAYA 593
N F + +D I+ CCG Y +P +CC++ C++ N+Y
Sbjct: 120 QEIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCCNSPENNTCSISNSYT 179
Query: 594 -GCTEVLQALFNNYGVAIG 647
GC E L+ G G
Sbjct: 180 NGCVEALKDTVKLAGTVFG 198
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 287 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 144
CN+E T +RYS + + + Y +E + ET + + R
Sbjct: 23 CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 287 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 144
CN+E T +RYS + + + Y +E + ET + + R
Sbjct: 23 CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 287 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 144
CN+E T +RYS + + + Y +E + ET + + R
Sbjct: 23 CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -3
Query: 287 CNDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQR 144
CN+E T +RYS + + + Y +E + ET + + R
Sbjct: 23 CNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDR 70
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 24.2 bits (50), Expect = 1.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 221 RDQLQSSAGGLYDCWGHRFHHCILRMLRCHQG 316
RD + + GG+Y H HH + H G
Sbjct: 263 RDSRRKNYGGVYHLDNHHVHHANHHAILGHSG 294
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.4 bits (48), Expect = 1.9
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 278 HHCILRMLRCHQGEQLHACHL-RDLHAGVD 364
+HC L CH G L L R LH ++
Sbjct: 127 NHCELHRAACHSGSSLTKSRLMRCLHHDIE 156
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 293 RMLRCHQGEQLHACHL 340
R LR H GE+ +AC L
Sbjct: 55 RHLRVHTGERPYACEL 70
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 396 TPLRPRSVSVPSTP 355
TPL+PR S+ S+P
Sbjct: 892 TPLQPRFYSISSSP 905
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 7.9
Identities = 11/48 (22%), Positives = 20/48 (41%)
Frame = -3
Query: 284 NDESDAPNNHTGHRRYSEAGL*QHSLYVSEL*MNRQSETQQSETCQRK 141
N++ T H+RYS + + Y +E + ET + R+
Sbjct: 257 NEKEKFLEERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRDRR 304
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,456
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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