Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h05
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   4.2  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   4.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 351 LAPPEGHRSSTGRRLQRTLA 292
           +APP GH +S+   L  TLA
Sbjct: 513 VAPPSGHHASSAPLLAATLA 532


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 411 YPTLKIFRKGELSSEYNGPRESNGIVKY 494
           Y   K++  GEL+S + GP+  + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 521 GAGSNLGTHVLDNAIRLPWSIVLG 450
           G G  L +H++   + +P S+++G
Sbjct: 128 GGGIELISHIISKQLHIPVSVLMG 151


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 336 GHRSSTGRRLQRTLALVSYNDRTK 265
           GHR   GRR +    L  YN   K
Sbjct: 47  GHREGLGRRHRYNFQLKPYNPEHK 70


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 336 GHRSSTGRRLQRTLALVSYNDRTK 265
           GHR   GRR +    L  YN   K
Sbjct: 48  GHREGLGRRHRYNFQLKPYNPEHK 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,146
Number of Sequences: 438
Number of extensions: 3611
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)