Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h02
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   258   6e-70
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    25   6.9  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   6.9  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    25   6.9  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    25   6.9  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  258 bits (631), Expect = 6e-70
 Identities = 124/173 (71%), Positives = 142/173 (82%)
 Frame = +3

Query: 87  AXLNEFLTRELAEDGYSGVEVRVTPIRSXIIIMATRTQSVLGXKGRKIRELTSVVXKRFN 266
           A LNEF TREL+E+GYSG EVRVTP RS III AT TQ VLG KGR+IRELT++V KRF 
Sbjct: 21  AELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFK 80

Query: 267 IPXQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 446
               +V LYAEKV  RGLCA+AQ ESL YKL+ GLAVRRA YGVLR++ME+GA+GCEVV+
Sbjct: 81  FAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVI 140

Query: 447 SGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 605
           SGKLR  RAKSMKF  G MI SG P  D++++ATRHVLLRQGVLG+KVKIMLP
Sbjct: 141 SGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP 193


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 302 GGYSWSLRYRPGRISXIQAYRRSRCTSCLLWXSPF 406
           GG     RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 399  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRH 554
            + F ME   +  + ++  +L+     S K    ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 302 GGYSWSLRYRPGRISXIQAYRRSRCTSCLLWXSPF 406
           GG     RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 302 GGYSWSLRYRPGRISXIQAYRRSRCTSCLLWXSPF 406
           GG     RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,406
Number of Sequences: 5004
Number of extensions: 43267
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)