Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h02
         (634 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   291   3e-79
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092...    29   4.1  
10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697     28   7.1  
08_01_0346 - 3063440-3064189                                           28   7.1  
05_06_0152 - 26008495-26009074,26010555-26011361,26016536-260166...    28   7.1  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  291 bits (714), Expect = 3e-79
 Identities = 143/182 (78%), Positives = 154/182 (84%)
 Frame = +3

Query: 87  AXLNEFLTRELAEDGYSGVEVRVTPIRSXIIIMATRTQSVLGXKGRKIRELTSVVXKRFN 266
           A LNE LTRELAEDGYSGVEVRVTP+R+ III ATRTQ+VLG KGR+IRELTSVV KRFN
Sbjct: 21  AELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFN 80

Query: 267 IPXQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 446
            P   V LYAEKV  RGLCAIAQAESL YKL+GGLAVRRACYGVLRF+MESGA+GCEV+V
Sbjct: 81  FPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIV 140

Query: 447 SGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQXGXN 626
           SGKLR QRAKSMKF  G MI SG P N Y+++A RHVLLRQGVLGIKVKIML WD  G  
Sbjct: 141 SGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQ 200

Query: 627 GP 632
           GP
Sbjct: 201 GP 202


>01_01_1234 -
           10007446-10007940,10008030-10008125,10008980-10009253,
           10009381-10009682,10010078-10010123,10010319-10010368,
           10011124-10011268,10012051-10012229,10012327-10012485,
           10012636-10012887,10012972-10013097,10013197-10013525,
           10014183-10014252
          Length = 840

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 170 RADGSDPHFHAGVPVLGQLPSEELIEXCLENPXS 69
           R DG +PH  A   + G    ++    CL  P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801


>10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697
          Length = 375

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 130 GTPAWKCGSLPS---ARXSLLWPPGHRVCSXRKDAKSV 234
           G+P   CG+ P    AR +LL P G  VCS  + A+ V
Sbjct: 35  GSPCGSCGAPPPWACARCTLLNPSGSGVCSACEAARPV 72


>08_01_0346 - 3063440-3064189
          Length = 249

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 336 AESLXYKLIGGLAVRRACYGVLR 404
           A S    L+GG A   ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243


>05_06_0152 -
           26008495-26009074,26010555-26011361,26016536-26016657,
           26016860-26017462
          Length = 703

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = -3

Query: 269 NVESLXYYGSQLTDFASFLSEHTLCPGGHNNDXRADGSDPHFHAGVPVLGQLPSEELIEX 90
           NV    ++ + L  FA FL   ++   G  +  R  G +P    G+P    +P+  L   
Sbjct: 131 NVPGFVFHPANLGAFAIFLQLPSIRAEGEPS-FRELGDNPLELPGLP---PMPASHLFSQ 186

Query: 89  CLENPXSNKFSLL*NIVH 36
            LE+P S  +  + N+V+
Sbjct: 187 FLEHPESQVYKAMMNLVN 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,553,358
Number of Sequences: 37544
Number of extensions: 313599
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)