Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h02
         (634 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal prot...   304   5e-83
BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p pro...   304   5e-83
AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p pro...   304   5e-83
AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA...   304   5e-83
X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal prot...   297   1e-80
AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila d...    29   4.0  
AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown prot...    29   4.0  
AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF...    29   4.0  
AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE...    29   4.0  
AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD...    29   4.0  
AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC...    29   4.0  
AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB...    29   4.0  
AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA...    29   4.0  

>L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal protein
           S3/AP endonucleaseDNA repair protein protein.
          Length = 246

 Score =  304 bits (747), Expect = 5e-83
 Identities = 149/182 (81%), Positives = 159/182 (87%)
 Frame = +3

Query: 87  AXLNEFLTRELAEDGYSGVEVRVTPIRSXIIIMATRTQSVLGXKGRKIRELTSVVXKRFN 266
           A LNEFLTRELAEDGYSGVEVRVTP R+ IIIMAT+TQ VLG KGR+IRELT++V KRFN
Sbjct: 21  AELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFN 80

Query: 267 IPXQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 446
                + LYAEKVA RGLCAIAQAESL YKL GGLAVRRACYGVLR+IMESGA+GCEVVV
Sbjct: 81  FETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVV 140

Query: 447 SGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQXGXN 626
           SGKLRGQRAKSMKFV GLMI SGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D     
Sbjct: 141 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKI 200

Query: 627 GP 632
           GP
Sbjct: 201 GP 202


>BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p
           protein.
          Length = 253

 Score =  304 bits (747), Expect = 5e-83
 Identities = 149/182 (81%), Positives = 159/182 (87%)
 Frame = +3

Query: 87  AXLNEFLTRELAEDGYSGVEVRVTPIRSXIIIMATRTQSVLGXKGRKIRELTSVVXKRFN 266
           A LNEFLTRELAEDGYSGVEVRVTP R+ IIIMAT+TQ VLG KGR+IRELT++V KRFN
Sbjct: 28  AELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFN 87

Query: 267 IPXQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 446
                + LYAEKVA RGLCAIAQAESL YKL GGLAVRRACYGVLR+IMESGA+GCEVVV
Sbjct: 88  FETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVV 147

Query: 447 SGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQXGXN 626
           SGKLRGQRAKSMKFV GLMI SGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D     
Sbjct: 148 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKI 207

Query: 627 GP 632
           GP
Sbjct: 208 GP 209


>AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p
           protein.
          Length = 246

 Score =  304 bits (747), Expect = 5e-83
 Identities = 149/182 (81%), Positives = 159/182 (87%)
 Frame = +3

Query: 87  AXLNEFLTRELAEDGYSGVEVRVTPIRSXIIIMATRTQSVLGXKGRKIRELTSVVXKRFN 266
           A LNEFLTRELAEDGYSGVEVRVTP R+ IIIMAT+TQ VLG KGR+IRELT++V KRFN
Sbjct: 21  AELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFN 80

Query: 267 IPXQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 446
                + LYAEKVA RGLCAIAQAESL YKL GGLAVRRACYGVLR+IMESGA+GCEVVV
Sbjct: 81  FETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVV 140

Query: 447 SGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQXGXN 626
           SGKLRGQRAKSMKFV GLMI SGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D     
Sbjct: 141 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKI 200

Query: 627 GP 632
           GP
Sbjct: 201 GP 202


>AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA
           protein.
          Length = 246

 Score =  304 bits (747), Expect = 5e-83
 Identities = 149/182 (81%), Positives = 159/182 (87%)
 Frame = +3

Query: 87  AXLNEFLTRELAEDGYSGVEVRVTPIRSXIIIMATRTQSVLGXKGRKIRELTSVVXKRFN 266
           A LNEFLTRELAEDGYSGVEVRVTP R+ IIIMAT+TQ VLG KGR+IRELT++V KRFN
Sbjct: 21  AELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFN 80

Query: 267 IPXQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 446
                + LYAEKVA RGLCAIAQAESL YKL GGLAVRRACYGVLR+IMESGA+GCEVVV
Sbjct: 81  FETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVV 140

Query: 447 SGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQXGXN 626
           SGKLRGQRAKSMKFV GLMI SGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D     
Sbjct: 141 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKI 200

Query: 627 GP 632
           GP
Sbjct: 201 GP 202


>X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal protein
           S3 protein.
          Length = 246

 Score =  297 bits (728), Expect = 1e-80
 Identities = 146/182 (80%), Positives = 156/182 (85%)
 Frame = +3

Query: 87  AXLNEFLTRELAEDGYSGVEVRVTPIRSXIIIMATRTQSVLGXKGRKIRELTSVVXKRFN 266
           A LNEFLTRELAEDGYSGVEVRVTP  + IIIMAT+TQ VL  KGR+IRELT++V KRFN
Sbjct: 21  AELNEFLTRELAEDGYSGVEVRVTPFGTEIIIMATKTQQVLAEKGRRIRELTAMVQKRFN 80

Query: 267 IPXQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 446
                + LYAEKVA RGLCAIAQAESL YKL G LAVRRACYGVLR+IMESGA+GCEVVV
Sbjct: 81  FETGRIELYAEKVAARGLCAIAQAESLRYKLTGELAVRRACYGVLRYIMESGAKGCEVVV 140

Query: 447 SGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQXGXN 626
           SGKLRGQRAKSMKFV GLMI SGDPCNDYV TATRHVLLRQGVLGIKVK+MLP+D     
Sbjct: 141 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKI 200

Query: 627 GP 632
           GP
Sbjct: 201 GP 202


>AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila
           dodeca-satellite protein1 protein.
          Length = 1301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 VLGXKGRKIRELTSVVXKRFNIPXQS 281
           +LG  G+++RE+  V   R NIP QS
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQS 208


>AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown
           protein.
          Length = 1301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 VLGXKGRKIRELTSVVXKRFNIPXQS 281
           +LG  G+++RE+  V   R NIP QS
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQS 208


>AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF,
           isoform F protein.
          Length = 1301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 VLGXKGRKIRELTSVVXKRFNIPXQS 281
           +LG  G+++RE+  V   R NIP QS
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQS 208


>AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE,
           isoform E protein.
          Length = 1301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 VLGXKGRKIRELTSVVXKRFNIPXQS 281
           +LG  G+++RE+  V   R NIP QS
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQS 208


>AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD,
           isoform D protein.
          Length = 1301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 VLGXKGRKIRELTSVVXKRFNIPXQS 281
           +LG  G+++RE+  V   R NIP QS
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQS 208


>AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC,
           isoform C protein.
          Length = 1301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 VLGXKGRKIRELTSVVXKRFNIPXQS 281
           +LG  G+++RE+  V   R NIP QS
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQS 208


>AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB,
           isoform B protein.
          Length = 1301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 VLGXKGRKIRELTSVVXKRFNIPXQS 281
           +LG  G+++RE+  V   R NIP QS
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQS 208


>AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA,
           isoform A protein.
          Length = 1301

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 204 VLGXKGRKIRELTSVVXKRFNIPXQS 281
           +LG  G+++RE+  V   R NIP QS
Sbjct: 183 ILGKGGQRLREIERVTATRINIPSQS 208


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,205,172
Number of Sequences: 53049
Number of extensions: 522456
Number of successful extensions: 1563
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2641708800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)