Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h02
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   284   4e-77
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   4.8  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  284 bits (696), Expect = 4e-77
 Identities = 141/202 (69%), Positives = 159/202 (78%), Gaps = 1/202 (0%)
 Frame = +3

Query: 30  MAVN-NISXXXXXXXXXXXXAXLNEFLTRELAEDGYSGVEVRVTPIRSXIIIMATRTQSV 206
           MA N N++            A LN FL +ELAEDGYSGVEVR TP R+ +IIMATRTQ+V
Sbjct: 1   MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60

Query: 207 LGXKGRKIRELTSVVXKRFNIPXQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRA 386
           LG +GR+I+ELTSVV KRF     SV LYAEKV+ RGLCA+AQ ESL YKL+GGLAVRRA
Sbjct: 61  LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120

Query: 387 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIXSGDPCNDYVNTATRHVLLR 566
           CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFV GLMI SG P NDY+  A RHV LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180

Query: 567 QGVLGIKVKIMLPWDQXGXNGP 632
           QGV+GIKVKIMLP+D  G NGP
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGP 202


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 536  QHCYQTCASQARSTRNQGQNHVA 604
            Q CY  CAS   ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 536  QHCYQTCASQARSTRNQGQNHVA 604
            Q CY  CAS   ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,560,783
Number of Sequences: 27780
Number of extensions: 256738
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)