Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1h02
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.9  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   9.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 146  SAGHSHPLGXHYYGHQDTECARXERT 223
            S  H  PL  H Y   D++ +  ERT
Sbjct: 1323 SEDHRRPLSEHIYSSIDSDYSTLERT 1348


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 164 DGSDPHFH 141
           DGS PHFH
Sbjct: 625 DGSSPHFH 632


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 470  TLTTQLARYNNFTTTGTRFHDETENXIASTTYSETSD 360
            T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1175 TVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1211


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = -3

Query: 470  TLTTQLARYNNFTTTGTRFHDETENXIASTTYSETSD 360
            T+ T L +Y N+T     F    +    + TY +T +
Sbjct: 1171 TVLTGLRKYTNYTIQVLAFTRVGDGVPTTVTYCQTEE 1207


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 191  QDTECARXERTQ 226
            QD +C R ERTQ
Sbjct: 1646 QDHDCIRQERTQ 1657


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 329 DSAKTTSSHLFSIQXYRLLWNVES 258
           D +   S+H  +I  Y  LW ++S
Sbjct: 122 DCSGIVSAHKIAIDEYERLWVLDS 145


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 515 RPLQ*LRQHCYQTCASQARSTRNQGQNHVAVGPAXQXRP 631
           RP Q  RQH       + ++   +GQ+ V  GP  +  P
Sbjct: 81  RPGQPSRQHAGFEFGKEYKNGFIKGQSEVQRGPGGRLSP 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,012
Number of Sequences: 438
Number of extensions: 3074
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)