Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1g22
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.2  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   3.7  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   6.4  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   6.4  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   6.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.4  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.4  

>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 268 SVNLPPEATRDNFPSVVEPTXPNVSKATGSTACFPDSNNPKRKF 137
           S  +PP  + D   S    T P+++   GSTA  P  NN +R++
Sbjct: 429 SPRVPPSFSDDAVSSFSLVTAPSINNVGGSTA--PSVNNQEREY 470


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 231 KLSLVASGGKFT-ETMMKVNLLIXNXSSDIKIRALNCLTNLISIEKDTNTAN 383
           KLS   SG     +++   ++L  N SS + +  L+CL N      D+ T+N
Sbjct: 118 KLSKSTSGSFVQGDSLQPGDILAVNHSSPLDVLVLSCLYNCTFAVCDSKTSN 169


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 132 ISDIFQ*SP*PLNCPVDYQSTKFCTLLCP 46
           ISD+    P P+N P+ Y +T   T  CP
Sbjct: 176 ISDLTSPPP-PINLPLSYSATGAATSNCP 203


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 147 FGLFESGKQAVLPVALDTFGXVGSTTEGKLSLVASGG 257
           FG+  SGK+AV+ V +D     G+ T+   +L  S G
Sbjct: 840 FGVHSSGKRAVIVVTIDNL-LKGAATQALQNLNLSCG 875


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 318 KIRALNCLTNLISIEKDTNTANSKPVDHRVTLITREXXRGLSEQ 449
           KIR  N    L+ I K + T N   VD+   L  +E  + L +Q
Sbjct: 775 KIRQENAFDKLLQISKKSKTINKPNVDY---LTLKELPKDLQKQ 815


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -1

Query: 346  LVRQFKARILISLEXFXIKRFTFIIVSVNLPPEATRDNFPSVVE 215
            L++++   I I L+    ++   +I  ++LP E   +NF S++E
Sbjct: 2640 LLQRYAVIISIFLDQGKCEKANDLITKLSLPYEELAENFVSILE 2683


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 256 PPEATRDNFPSVVEPTXPNVSKATGSTACFPDSNNP 149
           P  +T  N PSV  P  PN S +  STA  P S +P
Sbjct: 372 PAPSTFPN-PSVASPAFPNSSTSNPSTA--PASASP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,791
Number of Sequences: 5004
Number of extensions: 30115
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)