Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1g22
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234...    27   6.4  
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    27   8.5  

>04_04_0919 -
           29422003-29422267,29422411-29422660,29423163-29423481,
           29423625-29424794,29424879-29425388,29425449-29425607
          Length = 890

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
 Frame = +3

Query: 87  RGN*AAKEIIEKYPILXNFLFGLFESGKQAVLPVALDTFGXVGSTTEGKLSLV---ASGG 257
           R N    EI  + P      FGL +S   A+        G   STT G+ SL+      G
Sbjct: 236 RANGGTDEITSRLPA-----FGLNDSQAGAIQSCVSAVQGNGASTTSGRFSLIWGPPGTG 290

Query: 258 KFTETMMKVNLLIXNXSSDIKIRALNC 338
           K     + + +L+   +S  + R L C
Sbjct: 291 KTKTISVLLLMLMTTATSQSRYRVLTC 317


>04_04_0961 +
           29715938-29716034,29716918-29717133,29717438-29717776,
           29718247-29719274,29719465-29719551,29719636-29720043,
           29720394-29720558,29720742-29721036,29721131-29721345,
           29721838-29722143,29722474-29722537,29722644-29722883,
           29722959-29723062
          Length = 1187

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 324 RALNCLTNLISIEKDTNTANSKPVD----HRVTLITREXXRGLSEQPSSMDLLFDI 479
           +AL  + N  S  + T+T NSKP D          T +  +G+++Q S+ D+  DI
Sbjct: 621 QALESVINAESSSRVTSTENSKPADTDDEFEAENETDDQIQGITKQESAHDVSQDI 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,124,102
Number of Sequences: 37544
Number of extensions: 173201
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)