Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1g22
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125452-1|AAD12828.1|  311|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z68341-2|CAA92765.2|  649|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF125452-1|AAD12828.1|  311|Caenorhabditis elegans Hypothetical
           protein Y39F10C.1 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 24/73 (32%), Positives = 31/73 (42%)
 Frame = +3

Query: 153 LFESGKQAVLPVALDTFGXVGSTTEGKLSLVASGGKFTETMMKVNLLIXNXSSDIKIRAL 332
           L ES K        D F   G    G  S V +  K T  +  VNL     S D+K+   
Sbjct: 196 LLESDKNEWGTWTGDQFCDKGFAVCGIKSQVEARAKDTTALNNVNLHCCPVSEDVKL--T 253

Query: 333 NCLTNLISIEKDT 371
           +C  NL++I  DT
Sbjct: 254 SCTPNLVAIRIDT 266


>Z68341-2|CAA92765.2|  649|Caenorhabditis elegans Hypothetical
           protein F01G4.4 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 265 VNLPPEATRDNFPSVVEPTXPNVSKATGS--TACFPDSNN 152
           VN+PP+A R N P       PN+S  T S   A  P+ NN
Sbjct: 205 VNIPPDALRPNNP------VPNLSNGTSSQELAAAPNRNN 238


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 258  KFTETMMKVNLLIXNXSSDIKIRA-LNCLTNLI 353
            KFT+  +KVNLLI    S +K+ A LN  T LI
Sbjct: 1882 KFTDPHVKVNLLIHAHLSRVKLTAELNKDTELI 1914


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,810,462
Number of Sequences: 27780
Number of extensions: 160085
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)