Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1g20
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    29   0.50 
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    29   0.50 
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    29   0.50 
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    28   1.2  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    28   1.2  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    28   1.5  
AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical...    28   1.5  
AF125972-1|AAD14770.2|  349|Caenorhabditis elegans Hypothetical ...    28   1.5  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    28   1.5  
U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protei...    27   3.5  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    26   4.7  
AL032632-4|CAA21584.1|  469|Caenorhabditis elegans Hypothetical ...    26   4.7  
Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical pr...    26   6.2  

>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +2

Query: 116 KPGVNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 259
           KP V    P     C+   +G  GP G P +   P  A    RPG DA
Sbjct: 133 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 180


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +2

Query: 116 KPGVNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 259
           KP V    P     C+   +G  GP G P +   P  A    RPG DA
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 175


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 17/48 (35%), Positives = 20/48 (41%)
 Frame = +2

Query: 116 KPGVNMDPPKEFGGCRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 259
           KP V    P     C+   +G  GP G P +   P  A    RPG DA
Sbjct: 128 KPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 175


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 158 CRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 259
           C+   +G  GP G P +   P  A    RPG DA
Sbjct: 149 CKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 182


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 158 CRLTKEGRTGPGGKPSSQKSPHRAVVG*RPGVDA 259
           C+   +G  GP G P +   P  A    RPG DA
Sbjct: 149 CKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDA 182


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
            protein 8 protein.
          Length = 1206

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 204  LGFPPGPVRPSLVNLHPPN--SFGGSILTPGLVRTSSQHGPLSTSRS*PQTILRTRP 40
            LGF  GPV  ++V L+ P    FG ++     + ++S+ G    S +    +L+  P
Sbjct: 1078 LGFHTGPVAAAVVGLNAPRYCLFGDTVNMASRMESNSEPGKTQISETAKNLLLKEYP 1134


>AL032627-19|CAD66222.1|  309|Caenorhabditis elegans Hypothetical
           protein Y41C4A.16 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +2

Query: 176 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ*QPN 274
           G  GP G+  +   P +A    RPGVDAQ Q N
Sbjct: 191 GPAGPKGQRGAPGHPGQAGSPGRPGVDAQSQSN 223


>AF125972-1|AAD14770.2|  349|Caenorhabditis elegans Hypothetical
           protein H25P19.1 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -3

Query: 192 PGPVRPSLVNLH---PPNSFGGSILTPGLVRTSSQHGPLSTSRS*PQTILRTRP 40
           P P RP  +NL     P+  G +  TPG+   SS   P S  +S P+T   T P
Sbjct: 266 PEPSRPPRINLKFRFTPSKLGTA--TPGISIISSPTPPKSPPKSTPRTSKSTPP 317


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
            guanyly cyclase protein.
          Length = 1152

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -3

Query: 204  LGFPPGPVRPSLVNLHPPN--SFGGSILTPGLVRTSSQHGPLSTSRS*PQTILRTRP 40
            LGF  GPV  ++V L+ P    FG ++     + ++S+ G    S +    +L+  P
Sbjct: 1024 LGFHTGPVAAAVVGLNAPRYCLFGDTVNMASRMESNSEPGKTQISETAKNLLLKEYP 1080


>U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protein
           140, isoform a protein.
          Length = 289

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +2

Query: 83  LSGPC*LDVRTKPGVNMDPPKEFGGCRLTKE-GRTGPGGKPSSQKSPHRAVVG*RPG 250
           L G C      +PG    PP E G    + + GR GP G P     P     G RPG
Sbjct: 138 LPGGCIQCPPGRPGPR-GPPGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPG 193


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
 Frame = +2

Query: 110 RTKPGVNMD-----PPKEFGGCRLTKEGRTGPGGKPSSQKSP 220
           R  P  N D     PP E G  R  K+GR GP G+P     P
Sbjct: 176 RATPAPNFDWCFDCPPGEPG--RQGKQGRKGPPGRPGGSGLP 215


>AL032632-4|CAA21584.1|  469|Caenorhabditis elegans Hypothetical
           protein Y11D7A.8 protein.
          Length = 469

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 192 PGPVRPSLVNLHPPNSFGGSILTPGL 115
           P   RPS+++L  PN FG  + +  L
Sbjct: 68  PTSYRPSIISLQIPNEFGDDVSSDAL 93


>Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.6 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 176 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ 262
           G  GP G P +  +P +A    +PG DAQ
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAPGQPGSDAQ 214


>Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.5 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 176 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ 262
           G  GP G P +  +P +A    +PG DAQ
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAPGQPGSDAQ 214


>Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.1 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 176 GRTGPGGKPSSQKSPHRAVVG*RPGVDAQ 262
           G  GP G P +  +P +A    +PG DAQ
Sbjct: 186 GPAGPKGAPGAPGNPGQAGAPGQPGSDAQ 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,327,167
Number of Sequences: 27780
Number of extensions: 196305
Number of successful extensions: 559
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)