Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1g18
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 222 2e-58
07_01_0578 + 4295386-4296489,4297394-4297507 219 2e-57
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 34 0.12
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.12
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.22
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 31 0.66
03_05_0366 - 23505755-23506441 31 0.87
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 3.5
04_01_0588 + 7657510-7657992,7658397-7658843 29 4.7
02_04_0457 + 23093020-23093343,23093798-23093806 29 4.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 6.2
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 28 8.1
08_02_1285 - 25881091-25881798 28 8.1
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 28 8.1
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 222 bits (542), Expect = 2e-58
Identities = 110/201 (54%), Positives = 131/201 (65%), Gaps = 1/201 (0%)
Frame = +2
Query: 98 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 274
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+ AG
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 275 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 454
HQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 455 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSD 634
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYAD 182
Query: 635 ILKVYKSQRLRAGXGKMRNRR 697
K S +RAG GKMRNRR
Sbjct: 183 AEKTKDSVAIRAGKGKMRNRR 203
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 219 bits (535), Expect = 2e-57
Identities = 108/199 (54%), Positives = 132/199 (66%), Gaps = 2/199 (1%)
Frame = +2
Query: 107 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 280
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+ AGHQ
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 281 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 460
TSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 461 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDIL 640
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAE 185
Query: 641 KVYKSQRLRAGXGKMRNRR 697
K S +R G GKMRNRR
Sbjct: 186 KAKDSVGIRPGKGKMRNRR 204
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N I +PTF +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 287 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 397
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL N I +PT +G K G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>03_05_0366 - 23505755-23506441
Length = 228
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 173 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGT 349
++ AP D +V S + R P C S E + +AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 350 HRSGQGA 370
+ + + A
Sbjct: 168 NDNDEEA 174
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 70 ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 225
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 209 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 379
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 380 MCRGGRMFAPTKPWRRW 430
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 272 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 376
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -3
Query: 365 PDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQPP 264
P + +HHHGH + + H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 413 SWGRTYVHHDTCYRRHPDRTYEYHH 339
SWGR H D RR P R+ +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325
>08_02_1285 - 25881091-25881798
Length = 235
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 133 KERDGAGCSQAPPVRVQGAHTSGPG 207
+E DG G ++A V +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 356 TYEYHH-HGHAEFGRQHVRYPMIRH 285
T+++HH HGH FGR H +P H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHH 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,659,624
Number of Sequences: 37544
Number of extensions: 473120
Number of successful extensions: 1662
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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