Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1g09
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 188 5e-49
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 30 0.29
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 29 0.51
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 27 2.7
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 27 2.7
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 27 3.6
SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.8
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 26 6.3
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 25 8.3
>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
Arc21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 188 bits (459), Expect = 5e-49
Identities = 89/175 (50%), Positives = 123/175 (70%), Gaps = 3/175 (1%)
Frame = +1
Query: 181 MPAYHST---LTDYSQTVGNLAILPLRTSFRGPAPTSSDIELDIIDEALNYFKANVFFRF 351
MPAYHS+ LTD T GN+A+LPL+T FRGPA + + ++DIIDE + F+AN FFR
Sbjct: 1 MPAYHSSFLSLTDVP-TTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRN 59
Query: 352 YEIKSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVY 531
+EIK ADR LIY TL++SECL R+ + ++ ++++ LA+ F IPG GFPLN++Y
Sbjct: 60 FEIKGPADRTLIYGTLFISECLGRVNGLNYRD-AERQLNSLALENFSIPGSAGFPLNALY 118
Query: 532 ARPTSQQESDLMRQYLQQLRHETGTRVCEKVFATEDGKPSKWWLCFSRRKFMDKS 696
A P S Q++++MR YL Q R E R+ V+ATE PSKWW CFS+R+FM+K+
Sbjct: 119 APPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMNKA 173
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 30.3 bits (65), Expect = 0.29
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 419 KDCRSVPAKIKVNKRCTCWLYPSLTF 496
K CR++ ++K N +C C L P L F
Sbjct: 43 KKCRAIKQQLKSNLKCVCHLQPFLPF 68
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 29.5 bits (63), Expect = 0.51
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Frame = +1
Query: 307 DEALNYFKANVFFRFYEIKSD-ADRVL-IY--LTLYVSECLKRLQKCSSKNQGQQEMYML 474
D +L++ K + E+ S+ DR+L Y TLYVS LKR+ S + + E++++
Sbjct: 99 DVSLDFEKRMAQDAYKEVMSEYGDRMLPSYHPTTLYVSRVLKRIIAVSGMSDLKWELHVI 158
Query: 475 ---AISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTRVCEKVFAT 633
+ F +PG F + P + E L + H+ EK+ T
Sbjct: 159 RDPTPNAFVLPGGKVFVFEGIL--PMCKGEDGLAAVLAHETAHQVARHSAEKIAFT 212
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Frame = +2
Query: 602 GQECARKYLP-----LKMENQAS-GGSAFPEGNSWINPLS 703
G+ A +Y+P LK +N + GG A GN WINPLS
Sbjct: 173 GESFAGQYIPHIAAKLKEKNLVNLGGLAI--GNGWINPLS 210
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -3
Query: 514 GNLVPQECQTWI 479
GNLVPQ+C WI
Sbjct: 156 GNLVPQQCNLWI 167
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 726 NTIYCPGP--DKGFIHEFPSGKAEPPLAWFSIFSGKYFLAHS 607
N I PG +K +EFP+G E P S+ SGK L +S
Sbjct: 208 NEILDPGESTNKNLFYEFPNGTTE-PFEKNSVHSGKETLQYS 248
>SPAPB1E7.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 719 FTVQGQTKDLSMNFLLEKQSHHLLGFPSSVANTFSH 612
F+ +G TK+ + +F+ EK+ L F + A+TFS+
Sbjct: 114 FSEEGATKE-NEDFINEKEEEEDLSFSINAAHTFSN 148
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.8 bits (54), Expect = 6.3
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Frame = +1
Query: 370 ADRVLIYLTLYVSECLKRLQK--CSSKNQGQQ--EMYMLAISKFDIPGEPGFP----LNS 525
A L+++ L + E L RL+ SSKN+GQ+ ++ +++++ + G P L
Sbjct: 455 AASALLFIVLLI-EFLVRLKSNDSSSKNKGQEFLQILIVSVTLLVVAVPEGLPLAVTLAL 513
Query: 526 VYARPTSQQESDLMRQYLQQLRHETGTRVC 615
+A Q++++L+R T T +C
Sbjct: 514 AFATNRMQKDNNLVRHLQACETMGTATNIC 543
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -1
Query: 702 DKGFIHEFPSGKAEPPLAWFSIFSGKYFLAHSCP 601
DK E P GK + ++ IF G Y H P
Sbjct: 47 DKSAKPELPFGKPADRVPFWHIFKGDYVYVHQGP 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,795
Number of Sequences: 5004
Number of extensions: 52991
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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