Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1g09
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764...   150   1e-36
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894...    30   1.6  
10_08_0002 - 13986969-13989338                                         30   2.2  
08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799     29   2.8  
08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783     29   2.8  
08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917     29   5.0  

>02_02_0191 +
           7642942-7642944,7643405-7643513,7643578-7643886,
           7644697-7644839
          Length = 187

 Score =  150 bits (364), Expect = 1e-36
 Identities = 74/182 (40%), Positives = 114/182 (62%), Gaps = 15/182 (8%)
 Frame = +1

Query: 190 YHSTLTDYSQTVG--NLAILPLRTSFRGPAPT-------SSDI------ELDIIDEALNY 324
           YHS+  D +         +LPL+T  RGPAP        ++D+      + DI+DEA+ +
Sbjct: 3   YHSSFVDDTGITKACGCPLLPLKTHIRGPAPAFDQEPCQAADLCRAITDKADIVDEAITF 62

Query: 325 FKANVFFRFYEIKSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGE 504
           F+ANVFF+ + +KS AD++LIYLT Y++  LKRL+ C +   G + +  L + K  +PGE
Sbjct: 63  FRANVFFKNFNVKSPADKLLIYLTFYINIALKRLEGCRTLAVGTKAIINLGLEKVPVPGE 122

Query: 505 PGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTRVCEKVFATEDGKPSKWWLCFSRRKF 684
           PGFP   ++  P SQ+E++L+R YL+Q+R ET  R+    +   +G P+KWWL F++RKF
Sbjct: 123 PGFPFPGLFTLPQSQEEAELLRNYLKQIREETSGRLLNCAYRA-NGTPNKWWLAFAKRKF 181

Query: 685 MD 690
           M+
Sbjct: 182 MN 183


>07_01_1032 -
           8947594-8947769,8947885-8948601,8948973-8949049,
           8949264-8949655,8949746-8950002,8950234-8950921
          Length = 768

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +1

Query: 514 PLNSVYARPTSQQESDLMRQY-LQQLRHETGTRVCEKVFATEDGKPSKWWLCFSRRKF 684
           P+ ++  R TSQ+ES  +R Y L   +    TR+ E  F T+ GK ++  +  SR +F
Sbjct: 147 PIANLLRRATSQRESPFLRDYNLAVAKAPVQTRI-ETGFFTKKGKQAREAIGESRARF 203


>10_08_0002 - 13986969-13989338
          Length = 789

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
 Frame = +1

Query: 136 GLF*KRRLQRSSSDKMPAYHSTLTDYS-QTVGNLAILPLRTSFRGPAPTSSDIELDIIDE 312
           G+F K   ++    K   YH  ++ +  + +G +   P    F    P +  I    ID+
Sbjct: 424 GIFTKDSYEQMIIKKENEYHMNVSAFQLEPIGVVPDFPYVAPFSSSVPDACLIVRSFIDD 483

Query: 313 ALNYFKANVFFRFYE-IKSDADRVLI 387
           ++NY   +     Y+ +K   D++LI
Sbjct: 484 SVNYLSYDPMMDAYDVVKRYLDKLLI 509


>08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799
          Length = 188

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
 Frame = +1

Query: 430 KCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTR 609
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPIGFGQMYVHDWLLTTGTS 88

Query: 610 VCEKV------FATEDGKPSKWWLCFSRRKFMDKSF 699
             E V      F  + G+ +  W       F D SF
Sbjct: 89  ANENVVGRLQGFHLQAGQTTTSWYMAHTMVFSDGSF 124


>08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783
          Length = 188

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
 Frame = +1

Query: 430 KCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTR 609
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPIGFGQMYVHDWLLTTGTS 88

Query: 610 VCEKV------FATEDGKPSKWWLCFSRRKFMDKSF 699
             E V      F  + G+ +  W       F D SF
Sbjct: 89  ANENVVGRLQGFHLQAGQTTTSWYMAHTMVFSDGSF 124


>08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917
          Length = 188

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
 Frame = +1

Query: 430 KCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTR 609
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPVGFGQMYVHDWLLTTGTS 88

Query: 610 VCEKV------FATEDGKPSKWWLCFSRRKFMDKSF 699
             E V      F  + G+ +  W       F D SF
Sbjct: 89  ANENVVGRLQGFHLQAGQTTTSWYMAHTIVFTDGSF 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,994,105
Number of Sequences: 37544
Number of extensions: 324175
Number of successful extensions: 860
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)