Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1g03
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...   131   7e-32
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.9  
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   2.9  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.8  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   5.1  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             25   6.7  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  131 bits (317), Expect = 7e-32
 Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 1/167 (0%)
 Frame = +1

Query: 79  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPSAEEADEGTD 255
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  Q GD+ I G NPSAE+A+E  +
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59

Query: 256 SAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMXXXXXXXXXXXPDXXEVFXTNMNKV 435
              E+  ++V + RL  T +F DKKSY  Y+K YM           P+   VF  N    
Sbjct: 60  EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117

Query: 436 MKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTXIPIMMFFKHG 576
           +K IL  FK+  F+ GESMD D MV +M YR+ DG   P M+FFK G
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DG-ITPYMIFFKDG 162


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 116  ISSPVIMSL*IFILMDWRRLKII 48
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 138 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 28
           +F  + + L T +  LI   +  +E+IK  KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 181 VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 324
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 550 VXAYHQSLYIPSWQPC-HHN 494
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 294 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 196
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 84  LHFDGLEAIKNNKNR-KNGFSPQQLNRKS 1
           LH D  +A    +N   NG+ PQ LN  S
Sbjct: 437 LHHDKFDACTKGENTANNGYGPQTLNETS 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,486
Number of Sequences: 5004
Number of extensions: 43575
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)