Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1g03
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436... 103 2e-22
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 29 2.3
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656... 29 2.3
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 29 4.0
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 29 4.0
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 28 5.2
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930... 27 9.2
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 27 9.2
>11_06_0628 -
25643006-25643123,25643314-25643471,25643559-25643687,
25644378-25644451,25644771-25644798
Length = 168
Score = 103 bits (246), Expect = 2e-22
Identities = 62/169 (36%), Positives = 91/169 (53%), Gaps = 3/169 (1%)
Frame = +1
Query: 79 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 249
M +Y+D++TGDE+ SD++ + ++ +++EV G+ V + D+ I G NPSAE DEG
Sbjct: 1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59
Query: 250 TDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMXXXXXXXXXXXPDXXEVFXTNMN 429
D VDIV RL E F DKK + ++K Y+ + E F N+
Sbjct: 60 VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIE 115
Query: 430 KVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTXIPIMMFFKHG 576
K +LG+ K+LQFF GESM DG + Y+ DG P ++F HG
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHG 162
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 115 MFSDTYKMKLVDEVI-YEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLN 291
+FS VDE I +E+ + G+I ++GF G D+AVE ++ V
Sbjct: 101 LFSGAETTDEVDEYIEFEINVGCIGGGGGNITVDGFRGGGSGGGRGGDAAVEIEINEV-- 158
Query: 292 HRLVETYAFGDKKS--YTLYLKD 354
R+ E K S Y L L D
Sbjct: 159 -RVSEVRGIAGKASGTYVLVLLD 180
>01_05_0142 -
18564697-18564792,18564824-18564928,18565606-18565678,
18566262-18567637
Length = 549
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 522 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCXKYFXXVRRL 388
FHH H ++ PSK+L ++L+ FH F ++C +Y R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 184 TRAQGDIQIEGFNPSAEEADEGTDSAVESGVD--IVLNHRLVETYAFGD 324
TR+ +Q++GF PSA ++ +G+ + V S + IV +L +T G+
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGN 875
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 394 APSLPIXLXIFSYSL*GTMCRISCHRRRMFRLA 296
APS + + SYSL GT + RR +F LA
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLA 719
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 202 IQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKK 330
+ I N S EE +E ++A VD+ LN +E +G+KK
Sbjct: 711 VSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752
>06_01_1128 +
9300144-9300273,9300340-9300472,9300585-9300656,
9300783-9300926,9301453-9301524,9301584-9301677,
9301782-9301928
Length = 263
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 26 EKPFFRFLLFLIASNPS 76
E PFF FLL L++S+PS
Sbjct: 2 EAPFFFFLLLLVSSSPS 18
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 575 PCL-KNIMIGIXVPSKSLYSIMATMPSQSMDSPV 477
PCL K+ GI P+K ++ TMPS S + +
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKI 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,449,785
Number of Sequences: 37544
Number of extensions: 261864
Number of successful extensions: 554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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