Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1g02
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.60 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.79 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.2  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   7.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   9.7  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 401 YPINIGSNFPDSYNALTSEP 342
           YPI  G +FP  Y   T+ P
Sbjct: 384 YPIGSGGSFPSLYPMATTSP 403


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 380 NFPDSYNALTSEPPPTQLPFIKT 312
           N  D+Y ++ S P  T LPF+ T
Sbjct: 917 NMLDTYESVHSFPTETGLPFVYT 939



 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 271  DNLAQLTGFRTVPQVFING 327
            D +  + G  + P+VF+NG
Sbjct: 1515 DKIKFVPGTTSQPEVFVNG 1533


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 378 FSRFIQCFNIRATSHTVAIYKDLRYSSETSQL 283
           F   IQ +N+   SHTV  +  L+   E S L
Sbjct: 64  FGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHL 95


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 346 SDVKALYESGKLEPM 390
           SD+K++YES   E M
Sbjct: 35  SDLKSMYESNSEEQM 49


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 22  DSYFHLEIQYMGSQSGKITRSSKMAGSID 108
           D Y++  IQY        T ++KM  S D
Sbjct: 528 DDYWNCVIQYNTRAENHQTGTAKMGPSYD 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,071
Number of Sequences: 438
Number of extensions: 2607
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)