Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1f23
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 25 1.6
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.1
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 26 6.4
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.4
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 26 6.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 8.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.5
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 25 8.5
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 25 8.5
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.0 bits (52), Expect(2) = 1.6
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 147 SEDENVLDFIIED 185
SED+N+LDFI+ D
Sbjct: 624 SEDDNLLDFILRD 636
Score = 21.0 bits (42), Expect(2) = 1.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 120 DIIVNAQINSEDEN 161
++IVN +I S DEN
Sbjct: 585 EVIVNGRIISHDEN 598
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +1
Query: 556 ESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDYANNNINVIKIS 735
ES +K+ T Q R ++ T ++++ SE+ H+L Q++ ++ N N N ++ S
Sbjct: 153 ESAIQKVVDPATKQEKR-VSMETGKEVQWSSEMNYHFLLSKFQSRLIEHYNKNPNFVQPS 211
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 652 LLLHYLYDDQQNKNSDYANNNINV 723
LLL DD+++++SD +NN N+
Sbjct: 341 LLLEDTEDDEEDESSDASNNEYNI 364
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 586 ETFQRLRNKNLTTLNKIKYDSELLLHYL 669
+ ++ +NLT N+++ D + +HYL
Sbjct: 146 DVYEFFGGENLTLFNQVRVDCQCYIHYL 173
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 6.4
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 523 SMSKKKTPTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKNSDY 702
S+S+ ++LE +SKK +E N+ ++ N ++EL L D+Q Y
Sbjct: 116 SLSESPQESMLEKVSKKPKVSEA----HNEEISPENVETIENELDLPVKGKDEQTTGLVY 171
Query: 703 ANNN 714
N N
Sbjct: 172 KNAN 175
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 135 AQINSEDENVLDFIIEDEYYLKKR--GVGAHIIKVASSPQLRLLYKNAYSAVSCGNYSIL 308
A + +D L F+ E + + + V + + +S + LL+ +++++ G ++
Sbjct: 582 AVVPHDDGINLSFMCESKVFDLESVDSVTCNYVLSSSKNPMNLLF-TLHNSITDGKLNVH 640
Query: 309 CNLVQNGEYDLNAIMFNCAEIKLN 380
CN + G Y L I+F + L+
Sbjct: 641 CNDIIPGRYHLKTIVFKLKDSVLS 664
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 544 PTLLESISKKISTTETFQRLRNKNLTTLNKIKYDSELLLHYLYDDQQNKN 693
P +L S+ K TE R N LT L + E + Y DD NKN
Sbjct: 517 PVVLYSLQSK--DTEVRSRALNLILTFLELRNENLEFSIIYGMDDNDNKN 564
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 192 YLKKRGVGAHIIKVASSPQLRLLYKNAYSAVSCGNYS 302
Y G+ A +++ S +L L++ Y+A GN S
Sbjct: 62 YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVS 98
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 559 SISKKISTTETFQRLR-NKNLTTLNKIKYDSELLLHYLYDDQQNKNS 696
S+ ++ T Q+ R NK ++I +D LLLH+L+++ N S
Sbjct: 129 SLPSHVAEDRTAQQYRQNKYQLHFSRITFD--LLLHFLFENVSNGGS 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,488
Number of Sequences: 5004
Number of extensions: 41759
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -