Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc1f22
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0106 + 13654686-13655789 32 0.34
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 32 0.34
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 32 0.34
04_01_0167 + 1864956-1865495 30 1.4
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 30 1.4
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 30 1.8
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 28 5.6
01_06_1377 + 36764461-36765339 24 6.8
10_08_0826 - 20840445-20840504,20840692-20840778,20841344-20841706 27 9.8
>12_02_0106 + 13654686-13655789
Length = 367
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 198 RPARSVRANRAHRQY--WGPPPPPA 266
RPAR AHRQY W PP PPA
Sbjct: 6 RPARRKPTASAHRQYRYWAPPHPPA 30
>09_06_0204 - 21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 182 CVTRPQTCAVCACKPGSPTVLGAAPAA 262
CV +P TC C+CK T LGA A
Sbjct: 1183 CVYKPVTCQTCSCKNACVTTLGAQVVA 1209
>02_05_0417 -
28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -3
Query: 523 RRSYCNERFSGQLHSVNFVSRIVCIESTTHYSYIKKNNDAA*QNIIY*V*K*SHEHAH 350
R C GQ V+FV+RI I+ TH Y+ NI+ K +H AH
Sbjct: 297 RWEVCVSLSEGQFQQVSFVNRIATIKGGTHVDYVTNQIATHVMNIVNKRNKNAHMKAH 354
>04_01_0167 + 1864956-1865495
Length = 179
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 203 CAVCACKPGSPTVLGAAPAAGKPDWDH-LFLHKLISPCS 316
C+V A PG+ V A AAG P H L + PCS
Sbjct: 21 CSVTAAMPGARAVYSAPVAAGGPPSSHAASLRSTLPPCS 59
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 156 NKQSKTLHTASPAHR-PARSVRANRAHRQYWGPPPPPANRTGT 281
+ S +LH P H PA S A A W PPPP A+ +G+
Sbjct: 70 SSSSGSLHHLHPTHSLPAFSAAAAAAAADAW-PPPPGAHHSGS 111
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 263 GKP-DWDHLFLHKLISPCSHRVRWT 334
GKP DW H FLH++ P HR W+
Sbjct: 691 GKPQDWAHEFLHRI--PAMHRKTWS 713
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 159 KQSKTL-HTASPAHRPAR-SVRANRAHRQYWGPPPPPANRTG 278
+Q++T+ H S PA +V ++ HR ++ PPP A + G
Sbjct: 328 EQAQTIYHVTSSLSNPAPYAVLSDAGHRYFFANPPPRAGKNG 369
>01_06_1377 + 36764461-36765339
Length = 292
Score = 24.2 bits (50), Expect(2) = 6.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 171 TLHTASPAHRPARSVRANRAHRQYWGPPPPP 263
TL P+ RP +R A R+ PPP P
Sbjct: 130 TLPLLRPSGRPQGKLRIRLALRERSPPPPEP 160
Score = 22.2 bits (45), Expect(2) = 6.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 240 YWGPPPPPA 266
Y+ PPPPPA
Sbjct: 171 YFPPPPPPA 179
>10_08_0826 - 20840445-20840504,20840692-20840778,20841344-20841706
Length = 169
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 210 SVRANRAHRQYWGPPPPP 263
S+R R +W PPPPP
Sbjct: 86 SLRLEELERLFWRPPPPP 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,242,666
Number of Sequences: 37544
Number of extensions: 428714
Number of successful extensions: 1873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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