Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f22
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125003-1|BAC86021.1|  149|Homo sapiens protein ( Homo sapiens ...    31   2.7  
BC028985-1|AAH28985.1|  476|Homo sapiens thyroid hormone recepto...    31   3.6  
BC021540-1|AAH21540.1|  476|Homo sapiens thyroid hormone recepto...    31   3.6  
BC004999-1|AAH04999.1|  476|Homo sapiens thyroid hormone recepto...    31   3.6  
BC004249-1|AAH04249.1|  476|Homo sapiens thyroid hormone recepto...    31   3.6  
BC002680-1|AAH02680.1|  474|Homo sapiens thyroid hormone recepto...    31   3.6  
AF093836-1|AAD03037.1|  476|Homo sapiens zyxin-related protein 1...    31   3.6  
AF000974-1|AAB62222.1|  476|Homo sapiens ZRP-1 protein.                31   3.6  
AJ001902-1|CAA05080.1|  476|Homo sapiens TRIP6 protein.                31   4.7  
AF312032-5|AAK21007.1|  476|Homo sapiens thyroid receptor intera...    31   4.7  

>AK125003-1|BAC86021.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43013 fis, clone BRTHA2016215. ).
          Length = 149

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 212 CA-CKPGSPTVLGAAPAAGKPDW 277
           CA C+PGSP +LG AP    P W
Sbjct: 27  CAGCQPGSPALLGDAPGLRGPGW 49


>BC028985-1|AAH28985.1|  476|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 476

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 RSVRANRAHRQYWGPPPPPANRTGT 281
           R   + R  RQ + PPPPPA RTG+
Sbjct: 111 RGHASRRPDRQAYEPPPPPAYRTGS 135


>BC021540-1|AAH21540.1|  476|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 476

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 RSVRANRAHRQYWGPPPPPANRTGT 281
           R   + R  RQ + PPPPPA RTG+
Sbjct: 111 RGHASRRPDRQAYEPPPPPAYRTGS 135


>BC004999-1|AAH04999.1|  476|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 476

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 RSVRANRAHRQYWGPPPPPANRTGT 281
           R   + R  RQ + PPPPPA RTG+
Sbjct: 111 RGHASRRPDRQAYEPPPPPAYRTGS 135


>BC004249-1|AAH04249.1|  476|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 476

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 RSVRANRAHRQYWGPPPPPANRTGT 281
           R   + R  RQ + PPPPPA RTG+
Sbjct: 111 RGHASRRPDRQAYEPPPPPAYRTGS 135


>BC002680-1|AAH02680.1|  474|Homo sapiens thyroid hormone receptor
           interactor 6 protein.
          Length = 474

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 RSVRANRAHRQYWGPPPPPANRTGT 281
           R   + R  RQ + PPPPPA RTG+
Sbjct: 109 RGHASRRPDRQAYEPPPPPAYRTGS 133


>AF093836-1|AAD03037.1|  476|Homo sapiens zyxin-related protein 1
           protein.
          Length = 476

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 RSVRANRAHRQYWGPPPPPANRTGT 281
           R   + R  RQ + PPPPPA RTG+
Sbjct: 111 RGHASRRPDRQAYEPPPPPAYRTGS 135


>AF000974-1|AAB62222.1|  476|Homo sapiens ZRP-1 protein.
          Length = 476

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 RSVRANRAHRQYWGPPPPPANRTGT 281
           R   + R  RQ + PPPPPA RTG+
Sbjct: 111 RGHASRRPDRQAYEPPPPPAYRTGS 135


>AJ001902-1|CAA05080.1|  476|Homo sapiens TRIP6 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 207 RSVRANRAHRQYWGPPPPPANRTG 278
           R   + R  RQ + PPPPPA RTG
Sbjct: 111 RGHASRRPDRQAYEPPPPPAYRTG 134


>AF312032-5|AAK21007.1|  476|Homo sapiens thyroid receptor
           interacting protein 6 protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 219 ANRAHRQYWGPPPPPANRTGT 281
           + R  RQ + PPPPPA RTG+
Sbjct: 115 SRRPDRQAYEPPPPPAYRTGS 135


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,934,360
Number of Sequences: 237096
Number of extensions: 2264453
Number of successful extensions: 10169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10141
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)