Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f22
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    31   0.94 
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    31   0.94 
U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protei...    28   6.6  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    28   6.6  
AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular col...    28   6.6  
AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z19154-6|CAC35885.2|  388|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 441 VDSMHTIRDTKLTE*SCPLNRSLQYDRRNLASLNIAAGELSE 566
           +D MH +RD   +E + P+     +  RNL  LN++  ++ +
Sbjct: 218 LDDMHNLRDVDFSENNLPIVPEALFKLRNLRKLNLSGNKIEK 259


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 441 VDSMHTIRDTKLTE*SCPLNRSLQYDRRNLASLNIAAGELSE 566
           +D MH +RD   +E + P+     +  RNL  LN++  ++ +
Sbjct: 218 LDDMHNLRDVDFSENNLPIVPEALFKLRNLRKLNLSGNKIEK 259


>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 218 CKPGSPTVLGAAPAAGKPDWDHLFLHKLISPCSHRVRWT 334
           CK G   V    PA  KP W+H    K +   +  ++WT
Sbjct: 12  CKAGDKFVYPVLPAFAKPAWNHAAGPKTVFFWAPTIKWT 50


>U53333-2|AAA96155.1|  299|Caenorhabditis elegans Collagen protein
           34 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 270 GLPAAGAAPNTVGEPGLHAQT 208
           G P A  AP T GEPG+ AQ+
Sbjct: 190 GPPGAPGAPGTPGEPGVPAQS 210


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 252 AAPNTVGEPGLHAQTAQVCGRVTQCEASSI 163
           AAP T+  P    +T+ +CG + + E  SI
Sbjct: 3   AAPGTISPPARELKTSAICGYLHRIEVRSI 32


>AF410845-1|AAL76233.1|  299|Caenorhabditis elegans cuticular
           collagen RAM-4 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 270 GLPAAGAAPNTVGEPGLHAQT 208
           G P A  AP T GEPG+ AQ+
Sbjct: 190 GPPGAPGAPGTPGEPGVPAQS 210


>AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical
           protein C39B5.5 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 343 SCAGPPDPM*TWTDQFVKKQVVPVRFAGGGGGPQYC 236
           +C   PD    + D FV+ ++VP+  A     P+ C
Sbjct: 166 NCPELPDKAHAYDDNFVRTKIVPMTAAANNVNPEKC 201


>Z19154-6|CAC35885.2|  388|Caenorhabditis elegans Hypothetical
           protein C40H1.7 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 343 SCAGPPDPM*TWTDQFVKKQVVPVRFAGGGGGPQYC 236
           +C   P     + D FV+  V+PV  A G   PQ C
Sbjct: 59  NCPSVPALQYAYDDDFVRNTVLPVIAATGTDNPQKC 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,001
Number of Sequences: 27780
Number of extensions: 353485
Number of successful extensions: 1203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)