Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc1f22
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.84 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.84 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 364  HEHAHEDSCAGPP 326
            HEHA  + CA PP
Sbjct: 1743 HEHAMTEGCASPP 1755


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 364  HEHAHEDSCAGPP 326
            HEHA  + CA PP
Sbjct: 1739 HEHAMTEGCASPP 1751


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = -3

Query: 352 HEDSCAGP-PDPM*TWT-DQFVKKQVVPVRFAGGGGGPQYCR*ARFA 218
           H DS   P PD       DQ       P+ +   G GP+ C  ARFA
Sbjct: 404 HRDSAIYPNPDSFDPERFDQDAMASRHPMHYLPFGDGPRNCIGARFA 450


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 228  AHRQYWGPPPPPANRTG 278
            A RQ   PPPPP   +G
Sbjct: 1349 AWRQQQPPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,556
Number of Sequences: 438
Number of extensions: 4142
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)